Julie Chih-yu Chen
Julie Chih-yu Chen
Public Health Agency of Canada, National Microbiology Laboratory
Verified email at canada.ca
Title
Cited by
Cited by
Year
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
A Mathelier, X Zhao, AW Zhang, F Parcy, R Worsley-Hunt, DJ Arenillas, ...
Nucleic acids research 42 (D1), D142-D147, 2014
10822014
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ...
Nucleic acids research 44 (D1), D110-D115, 2016
9582016
A comparative study of the gut microbiota in immune-mediated inflammatory diseases—does a common dysbiosis exist?
JD Forbes, C Chen, NC Knox, RA Marrie, H El-Gabalawy, T de Kievit, ...
Microbiome 6 (1), 1-15, 2018
1032018
Deep feature selection: theory and application to identify enhancers and promoters
Y Li, CY Chen, WW Wasserman
Journal of Computational Biology 23 (5), 322-336, 2016
1032016
Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features
C Chen, Q Morris, JA Mitchell
BMC genomics 13 (1), 152, 2012
672012
Chronic treatment with aripiprazole induces differential gene expression in the rat frontal cortex
MC Cheng, DL Liao, CA Hsiung, CY Chen, YC Liao, CH Chen
International Journal of Neuropsychopharmacology 11 (2), 207-216, 2008
612008
Deep feature selection: Theory and application to identify enhancers and promoters
Y Li, CY Chen, WW Wasserman
International conference on research in computational molecular biology, 205-217, 2015
562015
On the identification of potential regulatory variants within genome wide association candidate SNP sets
C Chen, IS Chang, CA Hsiung, WW Wasserman
BMC medical genomics 7 (1), 34, 2014
562014
Spread of X-chromosome inactivation into autosomal sequences: role for DNA elements, chromatin features and chromosomal domains
AM Cotton, CY Chen, LL Lam, WW Wasserman, MS Kobor, CJ Brown
Human molecular genetics 23 (5), 1211-1223, 2014
542014
The identification of cis-regulatory elements: A review from a machine learning perspective
Y Li, C Chen, AM Kaye, WW Wasserman
Biosystems 138, 6-17, 2015
452015
Nuclear RNA sequencing of the mouse erythroid cell transcriptome
JA Mitchell, I Clay, D Umlauf, C Chen, CA Moir, CH Eskiw, S Schoenfelder, ...
PloS one 7 (11), e49274, 2012
302012
YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses
C Chen, W Shi, B Balaton, AM Matthews, Y Li, DJ Arenillas, A Mathelier, ...
Scientific Reports, 2016
212016
Evaluation of a commercially-available surrogate virus neutralization test for severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2)
EJ Valcourt, K Manguiat, A Robinson, JCY Chen, K Dimitrova, C Philipson, ...
Diagnostic microbiology and infectious disease 99 (4), 115294, 2021
182021
R432 is a key residue for the multiple functions of Ndt80p in Candida albicans
YL Yang, CW Wang, SN Leaw, IC Wang, CG Chen, JC Fan, KY Tseng, ...
Cellular and Molecular Life Sciences 69 (6), 1011-1023, 2012
132012
PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina
JW Hickmott, C Chen, DJ Arenillas, AJ Korecki, SL Lam, LL Molday, ...
Molecular Therapy-Methods & Clinical Development 3, 16051, 2016
122016
Detection of antimicrobial resistance using proteomics and the comprehensive antibiotic resistance database: a case study
C Chen, CG Clark, S Langner, DA Boyd, A Bharat, SJ McCorrister, ...
PROTEOMICS–Clinical Applications 14 (4), 1800182, 2020
92020
Plasmid negative regulation of CPAF expression is Pgp4 independent and restricted to invasive Chlamydia trachomatis Biovars
MJ Patton, CY Chen, C Yang, S McCorrister, C Grant, G Westmacott, ...
MBio 9 (1), 2018
92018
MrBac: a web server for draft metabolic network reconstructions for bacteria
YC Liao, JCY Chen, MH Tsai, YH Tang, FC Chen, CA Hsiung
Bioengineered bugs 2 (5), 284-287, 2011
92011
Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data
JC Chen, AD Tyler
Biology Direct 15, 2020
62020
Comparison of genomes and proteomes of four whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds
CG Clark, C Chen, C Berry, M Walker, SJ McCorrister, PM Chong, ...
PloS one 13 (1), e0190836, 2018
52018
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