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Dipan Shaw, PhD
Dipan Shaw, PhD
Deep Learning/AI Engineer, Illumina
Verified email at ucr.edu - Homepage
Title
Cited by
Cited by
Year
DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning
H Chen, D Shaw, J Zeng, D Bu, T Jiang
Bioinformatics 35 (14), i284-i294, 2019
362019
DeepIsoFun: a deep domain adaptation approach to predict isoform functions
D Shaw, H Chen, T Jiang
Bioinformatics 35 (15), 2535-2544, 2019
292019
DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms
D Shaw, H Chen, M Xie, T Jiang
BMC bioinformatics 22 (1), 1-22, 2021
172021
Protein folding in HP model on hexagonal lattices with diagonals
DL Shaw, ASM Shohidull Islam, M Sohel Rahman, M Hasan
BMC bioinformatics 15 (2), 1-13, 2014
172014
Single cell transcriptomic profiling of a neuron-astrocyte assembloid tauopathy model
HD Rickner, L Jiang, R Hong, NK O’Neill, CA Mojica, BJ Snyder, L Zhang, ...
Nature Communications 13 (1), 6275, 2022
132022
Transcriptome Profiling of ‘Candidatus Liberibacter asiaticus’ in Citrus and Psyllids
A De Francesco, AH Lovelace, D Shaw, M Qiu, Y Wang, F Gurung, ...
Phytopathology® 112 (1), 116-130, 2022
82022
Finer: enhancing the prediction of tissue-specific functions of isoforms by refining isoform interaction networks
H Chen, D Shaw, D Bu, T Jiang
NAR genomics and bioinformatics 3 (2), lqab057, 2021
42021
Single cell transcriptomic profiling of neurodegeneration mediated by tau propagation in a novel 3D neuron-astrocyte coculture model
H Rickner, L Jiang, R Hong, NK O'Neill, B Wolozin, C Cheng
32021
Approximation Algorithms for Three Dimensional Protein Folding
DL Shaw, ASM Islam, S Karmaker, MS Rahman
Fundamenta Informaticae 163 (4), 375-393, 2018
22018
The development of fuzzy ventilation controller
CS Wang, D Shaw, EC Yeh
Chinese Journal of Medical and Biological Engineering 15, 259-272, 1995
21995
Single cell transcriptomic profiling of tauopathy in a novel 3D neuron-astrocyte coculture model
HD Rickner, L Jiang, R Hong, NK O’Neill, CA Mojica, BJ Snyder, L Zhang, ...
bioRxiv, 2022.05. 03.490513, 2022
2022
FINER: enhancing the prediction of tissue-specific functions of isoforms by refining isoform
H Chen, D Shaw, D Bu
NAR genomics and bioinformatics, 3 (2), 2021
2021
Prediction of Isoform Functions and Interactions with ncRNAs via Deep Learning
DL Shaw
University of California, Riverside, 2020
2020
Protein Folding in the Hexagonal Prism Lattice with Diagonals
DL Shaw, MS Rahman, ASM Islam, S Karmaker
arXiv preprint arXiv:1407.4650, 2014
2014
Protein Folding in the Hexagonal Prism Lattice with Diagonals
D Lal Shaw, M Sohel Rahman, ASM Sohidull Islam, S Karmaker
arXiv e-prints, arXiv: 1407.4650, 2014
2014
Supplementary materials for FINER: enhancing the prediction of tissue-specific functions of isoforms by refining isoform interaction networks
H Chen, D Shaw, D Bu, T Jiang
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Articles 1–16