Tomaž Curk
Tomaž Curk
University of Ljubljana, Faculty of Computer and Information Science
Verified email at fri.uni-lj.si - Homepage
Title
Cited by
Cited by
Year
Orange: data mining toolbox in Python
J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
the Journal of machine Learning research 14 (1), 2349-2353, 2013
13082013
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
J König, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
Nature structural & molecular biology 17 (7), 909-915, 2010
9852010
Characterizing the RNA targets and position-dependent splicing regulation by TDP-43
JR Tollervey, T Curk, B Rogelj, M Briese, M Cereda, M Kayikci, J König, ...
Nature neuroscience 14 (4), 452-458, 2011
9212011
Orange: From experimental machine learning to interactive data mining
J Demšar, B Zupan, G Leban, T Curk
European conference on principles of data mining and knowledge discovery …, 2004
5162004
Comprehensive identification of RNA-binding domains in human cells
A Castello, B Fischer, CK Frese, R Horos, AM Alleaume, S Foehr, T Curk, ...
Molecular cell 63 (4), 696-710, 2016
3672016
The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs
BM Beckmann, R Horos, B Fischer, A Castello, K Eichelbaum, ...
Nature communications 6 (1), 1-9, 2015
3122015
Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain
B Rogelj, LE Easton, GK Bogu, LW Stanton, G Rot, T Curk, B Zupan, ...
Scientific reports 2 (1), 1-10, 2012
2692012
The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes
ML Änkö, M Müller-McNicoll, H Brandl, T Curk, C Gorup, I Henry, J Ule, ...
Genome biology 13 (3), 1-17, 2012
2422012
iCLIP predicts the dual splicing effects of TIA-RNA interactions
Z Wang, M Kayikci, M Briese, K Zarnack, NM Luscombe, G Rot, B Zupan, ...
PLoS biology 8 (10), e1000530, 2010
2292010
iCLIP-transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution
J Konig, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
Journal of visualized experiments: JoVE, 2011
2162011
ROC curve, lift chart and calibration plot
M Vuk, T Curk
Metodoloski zvezki 3 (1), 89, 2006
2142006
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
Y Sugimoto, J König, S Hussain, B Zupan, T Curk, M Frye, J Ule
Genome biology 13 (8), 1-13, 2012
2122012
SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export
M Müller-McNicoll, V Botti, AM de Jesus Domingues, H Brandl, ...
Genes & development 30 (5), 553-566, 2016
2112016
Analysis of alternative splicing associated with aging and neurodegeneration in the human brain
JR Tollervey, Z Wang, T Hortobágyi, JT Witten, K Zarnack, M Kayikci, ...
Genome research 21 (10), 1572-1582, 2011
2002011
Microarray data mining with visual programming
T Curk, J Demsar, Q Xu, G Leban, U Petrovic, I Bratko, G Shaulsky, ...
Bioinformatics 21 (3), 396-398, 2005
1902005
Conserved developmental transcriptomes in evolutionarily divergent species
A Parikh, ER Miranda, M Katoh-Kurasawa, D Fuller, G Rot, L Zagar, ...
Genome biology 11 (3), 1-12, 2010
1732010
Polymorphic members of the lag gene family mediate kin discrimination in Dictyostelium
R Benabentos, S Hirose, R Sucgang, T Curk, M Katoh, EA Ostrowski, ...
Current biology 19 (7), 567-572, 2009
1502009
Recursive splicing in long vertebrate genes
CR Sibley, W Emmett, L Blazquez, A Faro, N Haberman, M Briese, ...
Nature 521 (7552), 371-375, 2015
1152015
The RNA-binding protein HuR is essential for the B cell antibody response
MD Diaz-Muńoz, SE Bell, K Fairfax, E Monzon-Casanova, ...
Nature immunology 16 (4), 415-425, 2015
1122015
Aubergine iCLIP reveals piRNA-dependent decay of mRNAs involved in germ cell development in the early embryo
B Barckmann, S Pierson, J Dufourt, C Papin, C Armenise, F Port, ...
Cell reports 12 (7), 1205-1216, 2015
962015
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