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Haiyuan Yu
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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
NJ Krogan, G Cagney, H Yu, G Zhong, X Guo, A Ignatchenko, J Li, S Pu, ...
Nature 440 (7084), 637-643, 2006
34672006
A map of the interactome network of the metazoan C. elegans
S Li, CM Armstrong, N Bertin, H Ge, S Milstein, M Boxem, PO Vidalain, ...
Science 303 (5657), 540-543, 2004
21902004
High-quality binary protein interaction map of the yeast interactome network
H Yu, P Braun, MA Yıldırım, I Lemmens, K Venkatesan, J Sahalie, ...
Science 322 (5898), 104-110, 2008
17222008
A Bayesian networks approach for predicting protein-protein interactions from genomic data
R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, ...
science 302 (5644), 449-453, 2003
16352003
Detecting overlapping protein complexes in protein-protein interaction networks
T Nepusz, H Yu, A Paccanaro
Nature methods 9 (5), 471-472, 2012
13262012
Genomic analysis of regulatory network dynamics reveals large topological changes
NM Luscombe, M Madan Babu, H Yu, M Snyder, SA Teichmann, ...
Nature 431 (7006), 308-312, 2004
11952004
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
H Yu, PM Kim, E Sprecher, V Trifonov, M Gerstein
PLoS computational biology 3 (4), e59, 2007
11222007
An empirical framework for binary interactome mapping
K Venkatesan, JF Rual, A Vazquez, U Stelzl, I Lemmens, ...
Nature methods 6 (1), 83-90, 2009
10392009
Annotation transfer between genomes: protein–protein interologs and protein–DNA regulogs
H Yu, NM Luscombe, HX Lu, X Zhu, Y Xia, JDJ Han, N Bertin, S Chung, ...
Genome research 14 (6), 1107-1118, 2004
6832004
Biochemical and genetic analysis of the yeast proteome with a movable ORF collection
DM Gelperin, MA White, ML Wilkinson, Y Kon, LA Kung, KJ Wise, ...
Genes & development 19 (23), 2816-2826, 2005
6032005
An experimentally derived confidence score for binary protein-protein interactions
P Braun, M Tasan, M Dreze, M Barrios-Rodiles, I Lemmens, H Yu, ...
Nature methods 6 (1), 91-97, 2009
4882009
HINT: High-quality protein interactomes and their applications in understanding human disease
J Das, H Yu
BMC systems biology 6, 1-12, 2012
4462012
Three-dimensional reconstruction of protein networks provides insight into human genetic disease
X Wang, X Wei, B Thijssen, J Das, SM Lipkin, H Yu
Nature biotechnology 30 (2), 159-164, 2012
4382012
Divergence of transcription factor binding sites across related yeast species
AR Borneman, TA Gianoulis, ZD Zhang, H Yu, J Rozowsky, ...
Science 317 (5839), 815-819, 2007
4332007
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 1235587, 2013
4202013
Edgetic perturbation models of human inherited disorders
Q Zhong, N Simonis, QR Li, B Charloteaux, F Heuze, N Klitgord, S Tam, ...
Molecular systems biology 5 (1), 321, 2009
4122009
Genomic analysis of the hierarchical structure of regulatory networks
H Yu, M Gerstein
Proceedings of the National Academy of Sciences 103 (40), 14724-14731, 2006
4032006
Genomic analysis of essentiality within protein networks
H Yu, D Greenbaum, HX Lu, X Zhu, M Gerstein
TRENDS in Genetics 20 (6), 227-231, 2004
3812004
Literature-curated protein interaction datasets
ME Cusick, H Yu, A Smolyar, K Venkatesan, AR Carvunis, N Simonis, ...
Nature methods 6 (1), 39-46, 2009
3672009
Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network
N Simonis, JF Rual, AR Carvunis, M Tasan, I Lemmens, ...
Nature methods 6 (1), 47-54, 2009
3402009
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