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Katja Schwartz
Katja Schwartz
Verified email at stanford.edu
Title
Cited by
Cited by
Year
GC-content normalization for RNA-Seq data
D Risso, K Schwartz, G Sherlock, S Dudoit
BMC bioinformatics 12, 1-17, 2011
10612011
Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions
AN Schep, JD Buenrostro, SK Denny, K Schwartz, G Sherlock, ...
Genome research 25 (11), 1757-1770, 2015
3542015
BIM1 Encodes a Microtubule-binding Protein in Yeast
K Schwartz, K Richards, D Botstein
Molecular biology of the cell 8 (12), 2677-2691, 1997
2691997
Bulk Segregant Analysis by High-Throughput Sequencing Reveals a Novel Xylose Utilization Gene from Saccharomyces cerevisiae
JW Wenger, K Schwartz, G Sherlock
PLoS genetics 6 (5), e1000942, 2010
2352010
Structure–function relationships in yeast tubulins
KL Richards, KR Anders, E Nogales, K Schwartz, KH Downing, D Botstein
Molecular biology of the cell 11 (5), 1887-1903, 2000
1462000
Gene flow contributes to diversification of the major fungal pathogen Candida albicans
J Ropars, C Maufrais, D Diogo, M Marcet-Houben, A Perin, N Sertour, ...
Nature communications 9 (1), 2253, 2018
1402018
Saccharomyces cerevisiae S288C genome annotation: a working hypothesis
DG Fisk, CA Ball, K Dolinski, SR Engel, EL Hong, L Issel‐Tarver, ...
Yeast 23 (12), 857-865, 2006
1402006
Assembly of a phased diploid Candida albicansgenome facilitates allele-specific measurements and provides a simple model for repeat and indel structure
D Muzzey, K Schwartz, JS Weissman, G Sherlock
Genome biology 14, 1-14, 2013
1262013
A Genome-Wide Analysis Reveals No Nuclear Dobzhansky-Muller Pairs of Determinants of Speciation between S. cerevisiae and S. paradoxus, but Suggests …
KC Kao, K Schwartz, G Sherlock
PLoS genetics 6 (7), e1001038, 2010
852010
The dynamics of adaptive genetic diversity during the early stages of clonal evolution
JR Blundell, K Schwartz, D Francois, DS Fisher, G Sherlock, SF Levy
Nature ecology & evolution 3 (2), 293-301, 2019
582019
Analysis of repair mechanisms following an induced double-strand break uncovers recessive deleterious alleles in the Candida albicans diploid genome
A Feri, R Loll-Krippleber, PH Commere, C Maufrais, N Sertour, ...
MBio 7 (5), 10.1128/mbio. 01109-16, 2016
342016
Gene flow contributes to diversification of the major fungal pathogen Candida albicans. Nat Commun 9: 2253
J Ropars, C Maufrais, D Diogo, M Marcet-Houben, A Perin, N Sertour, ...
322018
APJ1 and GRE3 Homologs Work in Concert to Allow Growth in Xylose in a Natural Saccharomyces sensu stricto Hybrid Yeast
K Schwartz, JW Wenger, B Dunn, G Sherlock
Genetics 191 (2), 621-632, 2012
322012
The Valley-of-Death: reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment
KE Chiotti, DJ Kvitek, KH Schmidt, G Koniges, K Schwartz, EA Donckels, ...
Genomics 104 (6), 431-437, 2014
282014
Optimizing Sporulation Conditions for Different Saccharomyces cerevisiae Strain Backgrounds
SL Elrod, SM Chen, K Schwartz, EO Shuster
Meiosis: Volume 1, Molecular and Genetic Methods, 21-26, 2009
232009
Preparation of yeast DNA sequencing libraries
K Schwartz, G Sherlock
Cold Spring Harbor Protocols 2016 (10), pdb. prot088930, 2016
112016
Evolutionary dynamics and structural consequences of de novo beneficial mutations and mutant lineages arising in a constant environment
M Kinnersley, K Schwartz, DD Yang, G Sherlock, F Rosenzweig
BMC biology 19, 1-21, 2021
62021
High-throughput yeast strain sequencing
K Schwartz, G Sherlock
Cold Spring Harbor Protocols 2016 (10), pdb. top077651, 2016
52016
Paths to adaptation under fluctuating nitrogen starvation: The spectrum of adaptive mutations in Saccharomyces cerevisiae is shaped by retrotransposons and …
M Hays, K Schwartz, DT Schmidtke, D Aggeli, G Sherlock
PLoS Genetics 19 (5), e1010747, 2023
22023
Evolutionary dynamics of de novo mutations and mutant lineages arising in a simple, constant environment
M Kinnersley, K Schwartz, J Boswell, DD Yang, G Sherlock, ...
bioRxiv, 540625, 2019
22019
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