Samouil Farhi
Samouil Farhi
Broad Institute
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All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins
DR Hochbaum, Y Zhao, SL Farhi, N Klapoetke, CA Werley, V Kapoor, ...
Nature methods 11 (8), 825-833, 2014
COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets
TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ...
Nature 595 (7865), 107-113, 2021
Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics
Y Adam, JJ Kim, S Lou, Y Zhao, ME Xie, D Brinks, H Wu, ...
Nature 569 (7756), 413-417, 2019
GABA-receptive microglia selectively sculpt developing inhibitory circuits
E Favuzzi, S Huang, GA Saldi, L Binan, LA Ibrahim, M Fernández-Otero, ...
Cell 184 (15), 4048-4063. e32, 2021
Copper regulates cyclic-AMP-dependent lipolysis
L Krishnamoorthy, JA Cotruvo Jr, J Chan, H Kaluarachchi, A Muchenditsi, ...
Nature chemical biology 12 (8), 586-592, 2016
A bright and fast red fluorescent protein voltage indicator that reports neuronal activity in organotypic brain slices
AS Abdelfattah, SL Farhi, Y Zhao, D Brinks, P Zou, A Ruangkittisakul, ...
Journal of Neuroscience 36 (8), 2458-2472, 2016
Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment
WL Hwang, KA Jagadeesh, JA Guo, HI Hoffman, P Yadollahpour, ...
Nature genetics 54 (8), 1178-1191, 2022
MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging
D Schapiro, A Sokolov, C Yapp, YA Chen, JL Muhlich, J Hess, ...
Nature methods 19 (3), 311-315, 2022
Pyramidal neuron subtype diversity governs microglia states in the neocortex
JA Stogsdill, K Kim, L Binan, SL Farhi, JZ Levin, P Arlotta
Nature 608 (7924), 750-756, 2022
MITI minimum information guidelines for highly multiplexed tissue images
D Schapiro, C Yapp, A Sokolov, SM Reynolds, YA Chen, D Sudar, Y Xie, ...
Nature methods 19 (3), 262-267, 2022
Single-nucleus and spatial transcriptomics of archival pancreatic cancer reveals multi-compartment reprogramming after neoadjuvant treatment
WL Hwang, KA Jagadeesh, JA Guo, HI Hoffman, P Yadollahpour, ...
BioRxiv, 2020.08. 25.267336, 2020
Wide-area all-optical neurophysiology in acute brain slices
SL Farhi, VJ Parot, A Grama, M Yamagata, AS Abdelfattah, Y Adam, ...
Journal of Neuroscience 39 (25), 4889-4908, 2019
All-optical electrophysiology reveals brain-state dependent changes in hippocampal subthreshold dynamics and excitability
Y Adam, JJ Kim, S Lou, Y Zhao, D Brinks, H Wu, MA Mostajo-Radji, ...
bioRxiv, 281618, 2018
Photostick: a method for selective isolation of target cells from culture
MP Chien, CA Werley, SL Farhi, AE Cohen
Chemical science 6 (3), 1701-1705, 2015
The 22q11. 2 region regulates presynaptic gene-products linked to schizophrenia
R Nehme, O Pietiläinen, M Artomov, M Tegtmeyer, V Valakh, L Lehtonen, ...
Nature Communications 13 (1), 3690, 2022
Deep unrolled recovery in sparse biological imaging: Achieving fast, accurate results
YB Sahel, JP Bryan, B Cleary, SL Farhi, YC Eldar
IEEE Signal Processing Magazine 39 (2), 45-57, 2022
Compressed hadamard microscopy for high-speed optically sectioned neuronal activity recordings
VJ Parot, C Sing-Long, Y Adam, UL Böhm, LZ Fan, SL Farhi, AE Cohen
Journal of Physics D: Applied Physics 52 (14), 144001, 2019
Optogenetic probes for measuring membrane potential
AE Cohen, D Hochbaum, P Zou, SL Farhi, RE Campbell, Y Zhao, ...
US Patent 9,518,103, 2016
Astrocytic cell adhesion genes linked to schizophrenia correlate with synaptic programs in neurons
O Pietiläinen, A Trehan, D Meyer, J Mitchell, M Tegtmeyer, V Valakh, ...
Cell reports 42 (1), 2023
Sparse recovery of imaging transcriptomics data
JP Bryan, B Cleary, SL Farhi, YC Eldar
2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 802-806, 2021
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