| Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 2015 | 1190 | 2015 |
| Population-level analysis of gut microbiome variation G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ... Science 352 (6285), 560-564, 2016 | 1020 | 2016 |
| Eukaryotic plankton diversity in the sunlit ocean C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ... Science 348 (6237), 2015 | 994 | 2015 |
| Determinants of community structure in the global plankton interactome G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ... Science 348 (6237), 2015 | 477 | 2015 |
| A holistic approach to marine eco-systems biology E Karsenti, SG Acinas, P Bork, C Bowler, C De Vargas, J Raes, M Sullivan, ... PLoS biol 9 (10), e1001177, 2011 | 327 | 2011 |
| Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities R Logares, S Sunagawa, G Salazar, FM Cornejo‐Castillo, I Ferrera, ... Environmental microbiology 16 (9), 2659-2671, 2014 | 248 | 2014 |
| ACLAME: a CLAssification of Mobile genetic Elements, update 2010 R Leplae, G Lima-Mendez, A Toussaint Nucleic acids research 38 (suppl_1), D57-D61, 2010 | 222 | 2010 |
| Reticulate representation of evolutionary and functional relationships between phage genomes G Lima-Mendez, J Van Helden, A Toussaint, R Leplae Molecular biology and evolution 25 (4), 762-777, 2008 | 210 | 2008 |
| The powerful law of the power law and other myths in network biology G Lima-Mendez, J van Helden Molecular BioSystems 5 (12), 1482-1493, 2009 | 198 | 2009 |
| Prophinder: a computational tool for prophage prediction in prokaryotic genomes G Lima-Mendez, J Van Helden, A Toussaint, R Leplae Bioinformatics 24 (6), 863-865, 2008 | 189 | 2008 |
| Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes P Hingamp, N Grimsley, SG Acinas, C Clerissi, L Subirana, J Poulain, ... The ISME journal 7 (9), 1678-1695, 2013 | 149 | 2013 |
| A global ocean atlas of eukaryotic genes Q Carradec, E Pelletier, C Da Silva, A Alberti, Y Seeleuthner, ... Nature communications 9 (1), 1-13, 2018 | 134 | 2018 |
| Network Analysis Tools: from biological networks to clusters and pathways S Brohée, K Faust, G Lima-Mendez, G Vanderstocken, J Van Helden Nature protocols 3 (10), 1616, 2008 | 111 | 2008 |
| NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways S Brohée, K Faust, G Lima-Mendez, O Sand, R Janky, G Vanderstocken, ... Nucleic acids research 36 (suppl_2), W444-W451, 2008 | 109 | 2008 |
| Species–function relationships shape ecological properties of the human gut microbiome S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, RG Yunta, S Okuda, ... Nature microbiology 1 (8), 1-8, 2016 | 103 | 2016 |
| Cross-biome comparison of microbial association networks K Faust, G Lima-Mendez, JS Lerat, JF Sathirapongsasuti, R Knight, ... Frontiers in microbiology 6, 1200, 2015 | 87 | 2015 |
| Tara Oceans coordinators S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Bowler, C. de Vargas, G. Gorsky, N. Grimsley, P. Hingamp, D. Iudicone, O …, 2015 | 65 | 2015 |
| Analysis of the phage sequence space: the benefit of structured information G Lima-Mendez, A Toussaint, R Leplae Virology 365 (2), 241-249, 2007 | 59 | 2007 |
| A modular view of the bacteriophage genomic space: identification of host and lifestyle marker modules G Lima-Mendez, A Toussaint, R Leplae Research in microbiology 162 (8), 737-746, 2011 | 56 | 2011 |
| Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez, J Wang, ... Gut 68 (7), 1180-1189, 2019 | 48 | 2019 |
