Tomoaki Nishiyama
Tomoaki Nishiyama
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The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants
SA Rensing, D Lang, AD Zimmer, A Terry, A Salamov, H Shapiro, ...
Science 319 (5859), 64-69, 2008
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants
JA Banks, T Nishiyama, M Hasebe, JL Bowman, M Gribskov, ...
science 332 (6032), 960-963, 2011
TCC: an R package for comparing tag count data with robust normalization strategies
J Sun, T Nishiyama, K Shimizu, K Kadota
BMC bioinformatics 14 (1), 1-14, 2013
Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: Implication for land plant evolution
T Nishiyama, T Fujita, T Shin-I, M Seki, H Nishide, I Uchiyama, A Kamiya, ...
Proceedings of the National Academy of Sciences 100 (13), 8007-8012, 2003
Tagged mutagenesis and gene-trap in the moss, Physcomitrella patens by shuttle mutagenesis
T Nishiyama, Y Hiwatashi, K Sakakibara, M Kato, M Hasebe
DNA research 7 (1), 9-17, 2000
The Chara genome: secondary complexity and implications for plant terrestrialization
T Nishiyama, H Sakayama, J De Vries, H Buschmann, D Saint-Marcoux, ...
Cell 174 (2), 448-464. e24, 2018
Algal ancestor of land plants was preadapted for symbiosis
PM Delaux, GV Radhakrishnan, D Jayaraman, J Cheema, M Malbreil, ...
Proceedings of the National Academy of Sciences 112 (43), 13390-13395, 2015
A membrane trafficking pathway regulated by the plant-specific RAB GTPase ARA6
K Ebine, M Fujimoto, Y Okatani, T Nishiyama, T Goh, E Ito, T Dainobu, ...
Nature cell biology 13 (7), 853-859, 2011
The GID1-Mediated Gibberellin Perception Mechanism Is Conserved in the Lycophyte Selaginella moellendorffii but Not in the Bryophyte Physcomitrella patens
K Hirano, M Nakajima, K Asano, T Nishiyama, H Sakakibara, M Kojima, ...
The Plant Cell 19 (10), 3058-3079, 2007
Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions
AD Zimmer, D Lang, K Buchta, S Rombauts, T Nishiyama, M Hasebe, ...
BMC genomics 14 (1), 1-20, 2013
Class 1 KNOX genes are not involved in shoot development in the moss Physcomitrella patens but do function in sporophyte development
K Sakakibara, T Nishiyama, H Deguchi, M Hasebe
Evolution & development 10 (5), 555-566, 2008
Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts
FW Li, T Nishiyama, M Waller, E Frangedakis, J Keller, Z Li, ...
Nature Plants 6 (3), 259-272, 2020
Chloroplast phylogeny indicates that bryophytes are monophyletic
T Nishiyama, PG Wolf, M Kugita, RB Sinclair, M Sugita, C Sugiura, ...
Molecular Biology and Evolution 21 (10), 1813-1819, 2004
Involvement of auxin and a homeodomain-leucine zipper I gene in rhizoid development of the moss Physcomitrella patens
K Sakakibara, T Nishiyama, N Sumikawa, R Kofuji, T Murata, M Hasebe
Oxford University Press for The Company of Biologists Limited 130 (20), 4835 …, 2003
Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge
O Gusev, Y Suetsugu, R Cornette, T Kawashima, MD Logacheva, ...
Nature communications 5 (1), 1-9, 2014
A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution
Y Okano, N Aono, Y Hiwatashi, T Murata, T Nishiyama, T Ishikawa, ...
Proceedings of the National Academy of Sciences 106 (38), 16321-16326, 2009
Characterization of MADS-box genes in charophycean green algae and its implication for the evolution of MADS-box genes
Y Tanabe, M Hasebe, H Sekimoto, T Nishiyama, M Kitani, K Henschel, ...
Proceedings of the National Academy of Sciences 102 (7), 2436-2441, 2005
WOX13-like genes are required for reprogramming of leaf and protoplast cells into stem cells in the moss Physcomitrella patens
K Sakakibara, P Reisewitz, T Aoyama, T Friedrich, S Ando, Y Sato, ...
Development 141 (8), 1660-1670, 2014
Physcomitrella Cyclin-Dependent Kinase A Links Cell Cycle Reactivation to Other Cellular Changes during Reprogramming of Leaf Cells
M Ishikawa, T Murata, Y Sato, T Nishiyama, Y Hiwatashi, A Imai, M Kimura, ...
The Plant Cell 23 (8), 2924-2938, 2011
Isolation of homeodomain–leucine zipper genes from the moss Physcomitrella patens and the evolution of homeodomain–leucine zipper genes in land plants
K Sakakibara, T Nishiyama, M Kato, M Hasebe
Molecular Biology and Evolution 18 (4), 491-502, 2001
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