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Muaaz Gul Awan
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Adept: a domain independent sequence alignment strategy for gpu architectures
MG Awan, J Deslippe, A Buluc, O Selvitopi, S Hofmeyr, L Oliker, K Yelick
BMC bioinformatics 21, 1-29, 2020
372020
GPU-PCC: a GPU based technique to compute pairwise Pearson's correlation coefficients for big fMRI data
T Eslami, MG Awan, F Saeed
Proceedings of the 8th ACM international conference on bioinformatics …, 2017
322017
MS-REDUCE: an ultrafast technique for reduction of big mass spectrometry data for high-throughput processing
MG Awan, F Saeed
Bioinformatics 32 (10), 1518-1526, 2016
272016
Timemory: modular performance analysis for HPC
JR Madsen, MG Awan, H Brunie, J Deslippe, R Gayatri, L Oliker, Y Wang, ...
High Performance Computing: 35th International Conference, ISC High …, 2020
252020
The parallelism motifs of genomic data analysis
K Yelick, A Buluç, M Awan, A Azad, B Brock, R Egan, S Ekanayake, ...
Philosophical Transactions of the Royal Society A 378 (2166), 20190394, 2020
202020
Evaluating Performance and Portability of a core bioinformatics kernel on multiple vendor GPUs
M Haseeb, N Ding, J Deslippe, M Awan
2021 International workshop on performance, portability and productivity in …, 2021
192021
MaSS‐Simulator: A Highly Configurable Simulator for Generating MS/MS Datasets for Benchmarking of Proteomics Algorithms
MG Awan, F Saeed
Proteomics 18 (20), 1800206, 2018
152018
An out-of-core gpu based dimensionality reduction algorithm for big mass spectrometry data and its application in bottom-up proteomics
MG Awan, F Saeed
Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017
142017
GPU-DAEMON: GPU algorithm design, data management & optimization template for array based big omics data
MG Awan, T Eslami, F Saeed
Computers in biology and medicine 101, 163-173, 2018
132018
Gpu-arraysort: A parallel, in-place algorithm for sorting large number of arrays
MG Awan, F Saeed
2016 45th International Conference on Parallel Processing Workshops (ICPPW …, 2016
132016
MATLAB package for discrete dipole approximation by graphics processing unit: Fast Fourier Transform and Biconjugate Gradient
M Shabaninezhad, MG Awan, G Ramakrishna
Journal of Quantitative Spectroscopy and Radiative Transfer 262, 107501, 2021
122021
On the sampling of big mass spectrometry data
MG Awan, F Saeed
Proceedings of the 7th International Conference on Bioinformatics and …, 2015
92015
Instruction roofline: An insightful visual performance model for gpus
N Ding, M Awan, S Williams
Concurrency and Computation: Practice and Experience 34 (20), e6591, 2022
82022
Accelerating large scale de novo metagenome assembly using GPUs
MG Awan, S Hofmeyr, R Egan, N Ding, A Buluc, J Deslippe, L Oliker, ...
Proceedings of the International Conference for High Performance Computing …, 2021
42021
Evaluating the Potential of Disaggregated Memory Systems for HPC applications
N Ding, P Maris, HA Nam, T Groves, MG Awan, LA Lindsey, C Daley, ...
arXiv preprint arXiv:2306.04014, 2023
22023
Extreme-scale many-against-many protein similarity search
O Selvitopi, S Ekanayake, G Guidi, MG Awan, GA Pavlopoulos, A Azad, ...
SC22: International Conference for High Performance Computing, Networking …, 2022
22022
Methodology for Evaluating the Potential of Disaggregated Memory Systems
N Ding, S Williams, HA Nam, T Groves, MG Awan, LA Lindsey, C Daley, ...
2022 IEEE/ACM International Workshop on Resource Disaggregation in High …, 2022
22022
Benchmarking mass spectrometry based proteomics algorithms using a simulated database
MG Awan, AG Awan, F Saeed
Network Modeling Analysis in Health Informatics and Bioinformatics 10 (1), 23, 2021
22021
Slm-transform: A method for memory-efficient indexing of spectra for database search in lc-ms/ms proteomics
M Haseeb, MG Awan, AS Cadigan, F Saeed
bioRxiv, 531681, 2019
22019
Understanding the power of evolutionary computation for gpu code optimization
JY Liou, M Awan, S Hofmeyr, S Forrest, CJ Wu
2022 IEEE International Symposium on Workload Characterization (IISWC), 185-198, 2022
12022
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Artikler 1–20