Mark A. Ragan

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Cheong Xin ChanAustralian Centre for Ecogenomics, Sch. Chemistry & Molecular Biosciences, University ofVerified email at uq.edu.au
Rob BeikoAssociate Professor of Computer Science, Dalhousie UniversityVerified email at dal.ca
Melissa J DavisJoint Head, Bioinformatics Division, The Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
Robin R. GutellProfessor, Department of Integrative Biology, University of Texas at AustinVerified email at austin.utexas.edu
David MillerProfessor, James Cook UniversityVerified email at jcu.edu.au
Sriganesh SrihariQIMR-Berghofer Medical Research InstituteVerified email at qimrberghofer.edu.au
Raúl A. González-PechEberly Postdoctoral Research Fellow at Pennsylvania State UniversityVerified email at psu.edu
Chanyarat Paungfoo-LonhienneThe University of QueenslandVerified email at uq.edu.au
Terry GaasterlandUniversity of California San DiegoVerified email at ucsd.edu
Susanne.Schmidt@uq.edu.auProfessor, School of Agriculture and Food Sciences, The University of Queensland, AustraliaVerified email at uq.edu.au
Christoph W. SensenDG & CEO, HCEMM Kft.Verified email at hcemm.eu
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerified email at uq.edu.au
Yun Kit YeohAustralian Institute of Marine Science (AIMS)Verified email at aims.gov.au
Aaron DarlingIllumina Australia; Professor @ University of Technology SydneyVerified email at illumina.com
W. Ford DoolittleDalhousie UniversityVerified email at dal.ca
Guillaume BernardPostdoctoral Fellow, Institut de Biologie de L’Ecole Normale Supérieure (IBENS)Verified email at bio.ens.psl.eu
Elizabeth SkippingtonSenior Scientist, Bioinformatics and Computational Biology, GenentechVerified email at gene.com
Karen R. LipsUniversity of Maryland, Southern Illinois University, St. Lawrence UniversityVerified email at umd.edu
Alex HyattFellow CSIROVerified email at csiro.au
Rick SpeareJames Cook UniversityVerified email at jcu.edu.au

Mark A. Ragan

Institute for Molecular Bioscience, The University of Queensland

Verified email at uq.edu.au - Homepage

Computational genomics bioinformatics evolutionary biology systems biology marine biology


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Chytridiomycosis causes amphibian mortality associated with population declines in the rain forests of Australia and Central America L Berger, R Speare, P Daszak, DE Green, AA Cunningham, CL Goggin, ... Proceedings of the National Academy of Sciences 95 (15), 9031-9036, 1998	2608	1998
The complete genome of the crenarchaeon Sulfolobus solfataricus P2 Q She, RK Singh, F Confalonieri, Y Zivanovic, G Allard, MJ Awayez, ... Proceedings of the National Academy of Sciences 98 (14), 7835-7840, 2001	948	2001
Phlorotannins, brown algal polyphenols MA Ragan, KW Glombitza Progress in Phycological Research 4, 129-241, 1986	830	1986
Identification of domoic acid, a neuroexcitatory amino acid, in toxic mussels from eastern Prince Edward Island JLC Wright, RK Boyd, ASW Freitas, M Falk, RA Foxall, WD Jamieson, ... Canadian Journal of Chemistry 67 (3), 481-490, 1989	585	1989
Highways of gene sharing in prokaryotes RG Beiko, TJ Harlow, MA Ragan Proceedings of the National Academy of Sciences 102 (40), 14332-14337, 2005	569	2005
Phylogenetic inference based on matrix representation of trees MA Ragan Molecular phylogenetics and evolution 1 (1), 53-58, 1992	544	1992
Visualization of image data from cells to organisms T Walter, DW Shattuck, R Baldock, ME Bastin, AE Carpenter, S Duce, ... Nature methods 7 (Suppl 3), S26-S41, 2010	308	2010
Dynamics of genome rearrangement in bacterial populations AE Darling, I Miklós, MA Ragan PLoS Genetics 4 (7), e1000128, 2008	254	2008
A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene. MA Ragan, CJ Bird, EL RicE, RR Gutell, CA Murphy, RK Singh Proceedings of the National Academy of Sciences 91 (15), 7276-7280, 1994	242	1994
Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates KS Kassahn, VT Dang, SJ Wilkins, AC Perkins, MA Ragan Genome research 19 (8), 1404-1418, 2009	222	2009
On surrogate methods for detecting lateral gene transfer MA Ragan FEMS Microbiology letters 201 (2), 187-191, 2001	222	2001
Detection of lateral gene transfer among microbial genomes MA Ragan Current opinion in genetics & development 11 (6), 620-626, 2001	219	2001
Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence YK Yeoh, PG Dennis, C Paungfoo-Lonhienne, L Weber, R Brackin, ... Nature communications 8 (1), 215, 2017	215	2017
A novel clade of protistan parasites near the animal-fungal divergence. MA Ragan, CL Goggin, RJ Cawthorn, L Cerenius, AV Jamieson, ... Proceedings of the National Academy of Sciences 93 (21), 11907-11912, 1996	214	1996
The mammalian PYHIN gene family: phylogeny, evolution and expression JA Cridland, EZ Curley, MN Wykes, K Schroder, MJ Sweet, TL Roberts, ... BMC evolutionary biology 12, 1-17, 2012	196	2012
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database A Bissett, A Fitzgerald, T Meintjes, PM Mele, F Reith, PG Dennis, ... GigaScience 5, 21, 2016	194	2016
Lateral genetic transfer and the construction of genetic exchange communities E Skippington, MA Ragan FEMS microbiology reviews 35 (5), 707-735, 2011	190	2011
Supervised, semi-supervised and unsupervised inference of gene regulatory networks SR Maetschke, PB Madhamshettiwar, MJ Davis, MA Ragan Briefings in Bioinformatics 15, 195-211, 2013	186	2013
A biochemical phylogeny of the protists MA Ragan, DJ Chapman Elsevier (originally published by Academic Press), 1978	186*	1978
Nitrogen fertilizer dose alters fungal communities in sugarcane soil and rhizosphere C Paungfoo-Lonhienne, YK Yeoh, NRP Kasinadhuni, TGA Lonhienne, ... Scientific reports 5, 8678, 2015	185	2015

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