ArrayExpress update—simplifying data submissions N Kolesnikov, E Hastings, M Keays, O Melnichuk, YA Tang, E Williams, ... Nucleic acids research 43 (D1), D1113-D1116, 2015 | 815 | 2015 |
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ... Nucleic acids research 37 (suppl_1), D868-D872, 2009 | 509 | 2009 |
ArrayExpress update—trends in database growth and links to data analysis tools G Rustici, N Kolesnikov, M Brandizi, T Burdett, M Dylag, I Emam, A Farne, ... Nucleic acids research 41 (D1), D987-D990, 2012 | 433 | 2012 |
ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments H Parkinson, U Sarkans, N Kolesnikov, N Abeygunawardena, T Burdett, ... Nucleic acids research 39 (suppl_1), D1002-D1004, 2010 | 379 | 2010 |
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level P Rocca-Serra, M Brandizi, E Maguire, N Sklyar, C Taylor, K Begley, ... Bioinformatics 26 (18), 2354-2356, 2010 | 317 | 2010 |
The EBI RDF platform: linked open data for the life sciences S Jupp, J Malone, J Bolleman, M Brandizi, M Davies, L Garcia, A Gaulton, ... Bioinformatics 30 (9), 1338-1339, 2014 | 293 | 2014 |
The first RSBI (ISA-TAB) workshop:“can a simple format work for complex studies?” SA Sansone, P Rocca-Serra, M Brandizi, A Brazma, D Field, J Fostel, ... OMICS A Journal of Integrative Biology 12 (2), 143-149, 2008 | 114 | 2008 |
KnetMiner: a comprehensive approach for supporting evidence‐based gene discovery and complex trait analysis across species K Hassani‐Pak, A Singh, M Brandizi, J Hearnshaw, JD Parsons, ... Plant Biotechnology Journal 19 (8), 1670-1678, 2021 | 71 | 2021 |
The BioSample database (BioSD) at the european bioinformatics institute M Gostev, A Faulconbridge, M Brandizi, J Fernandez-Banet, U Sarkans, ... Nucleic acids research 40 (D1), D64-D70, 2012 | 60 | 2012 |
Updates to BioSamples database at european bioinformatics institute A Faulconbridge, T Burdett, M Brandizi, M Gostev, R Pereira, D Vasant, ... Nucleic acids research 42 (D1), D50-D52, 2014 | 34 | 2014 |
DC-ATLAS: a systems biology resource to dissect receptor specific signal transduction in dendritic cells D Cavalieri, D Rivero, L Beltrame, SI Buschow, E Calura, L Rizzetto, ... Immunome research 6, 1-12, 2010 | 30 | 2010 |
Towards FAIRer biological knowledge networks using a hybrid linked data and graph database approach M Brandizi, A Singh, C Rawlings, K Hassani-Pak Journal of integrative bioinformatics 15 (3), 20180023, 2018 | 26 | 2018 |
Knowledge sharing and collaboration in translational research, and the DC-THERA Directory A Splendiani, M Gündel, JM Austyn, D Cavalieri, C Scognamiglio, ... Briefings in bioinformatics 12 (6), 562-575, 2011 | 20 | 2011 |
Getting the best of Linked Data and Property Graphs: rdf2neo and the KnetMiner use case. M Brandizi, A Singh, K Hassani-Pak SWAT4LS, 2018 | 16 | 2018 |
graph2tab, a library to convert experimental workflow graphs into tabular formats M Brandizi, N Kurbatova, U Sarkans, P Rocca-Serra Bioinformatics 28 (12), 1665-1667, 2012 | 11 | 2012 |
The genopolis microarray database A Splendiani, M Brandizi, G Even, O Beretta, N Pavelka, M Pelizzola, ... BMC bioinformatics 8, 1-10, 2007 | 10 | 2007 |
Orchestrating differential data access for translational research: a pilot implementation M Brandizi, O Melnichuk, R Bild, F Kohlmayer, B Rodriguez-Castro, ... BMC Medical Informatics and Decision Making 17, 1-14, 2017 | 9 | 2017 |
Dawn Field, Stephen Harris, Winston Hide, Oliver Hofmann, Steffen Neumann, Peter Sterk, Weida Tong, and Susanna-Assunta Sansone. ISA software suite: supporting standards … P Rocca-Serra, M Brandizi, E Maguire, N Sklyar, C Taylor, K Begley Bioinformatics (Oxford, England) 26 (18), 2354-6, 2010 | 5 | 2010 |
Organizing knowledge to enable faster data interpretation in COVID-19 research J Hearnshaw, M Brandizi, A Singh, C Rawlings, K Hassani-Pak F1000Research 10, ELIXIR-703, 2021 | 4 | 2021 |
KnetMiner-Intelligent search and visualisation of connected data to explain complex traits and diseases K Hassani-Pak, A Singh, M Brandizi, J Hearnshaw, S Amberkar, ... BioRxiv, 2020.04. 02.017004, 2020 | 3 | 2020 |