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Rahuman S Malik Sheriff
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MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
3282020
BioModels—15 years of sharing computational models in life science
RS Malik-Sheriff, M Glont, TVN Nguyen, K Tiwari, MG Roberts, A Xavier, ...
Nucleic acids research 48 (D1), D407-D415, 2020
2942020
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
1962020
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2
M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ...
Journal of integrative bioinformatics 16 (2), 20190021, 2019
1072019
Reproducibility in systems biology modelling
K Tiwari, S Kananathan, MG Roberts, JP Meyer, MU Sharif Shohan, ...
Molecular systems biology 17 (2), e9982, 2021
922021
BioModels: expanding horizons to include more modelling approaches and formats
M Glont, TVN Nguyen, M Graesslin, R Hälke, R Ali, J Schramm, ...
Nucleic Acids Research 46 (D1), D1248-D1253, 2018
912018
Positive feedback keeps duration of mitosis temporally insulated from upstream cell-cycle events
AR Araujo, L Gelens, RSM Sheriff, SDM Santos
Molecular cell 64 (2), 362-375, 2016
882016
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
BioRxiv, 350991, 2018
592018
GATA3 mediates a fast, irreversible commitment to BMP4-driven differentiation in human embryonic stem cells
A Gunne-Braden, A Sullivan, B Gharibi, RSM Sheriff, A Maity, YF Wang, ...
Cell stem cell 26 (5), 693-706. e9, 2020
522020
Building digital twins of the human immune system: toward a roadmap
R Laubenbacher, A Niarakis, T Helikar, G An, B Shapiro, RS Malik-Sheriff, ...
NPJ digital medicine 5 (1), 64, 2022
482022
The european bioinformatics institute (EMBL-EBI) in 2021
G Cantelli, A Bateman, C Brooksbank, AI Petrov, RS Malik-Sheriff, ...
Nucleic Acids Research 50 (D1), D11-D19, 2022
472022
Nonparametric bayesian networks
K Ickstadt, B Bornkamp, M Grzegorczyk, J Wieczorek, MR Sheriff, ...
Bayesian statistics 9, 283-316, 2010
452010
Best practices to maximize the use and reuse of quantitative and systems pharmacology models: recommendations from the United Kingdom quantitative and systems pharmacology network
L Cucurull‐Sanchez, MJ Chappell, V Chelliah, SY Amy Cheung, G Derks, ...
CPT: pharmacometrics & systems pharmacology 8 (5), 259-272, 2019
402019
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
D Waltemath, M Golebiewski, ML Blinov, P Gleeson, H Hermjakob, ...
Journal of integrative bioinformatics 17 (2-3), 20200005, 2020
312020
Diverse patterns of molecular changes in the mechano-responsiveness of focal adhesions
RS Malik-Sheriff, S Imtiaz, HE Grecco, E Zamir
Scientific Reports 8 (1), 2187, 2018
222018
Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC] 2 2019 CoLoMoTo/SysMod Workshop
A Niarakis, M Kuiper, M Ostaszewski, RS Malik Sheriff, C Casals-Casas, ...
Briefings in bioinformatics 22 (2), 1848-1859, 2021
202021
Community members. 2020. SBML level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 3
163
BioSimulators: a central registry of simulation engines and services for recommending specific tools
B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ...
Nucleic acids research 50 (W1), W108-W114, 2022
152022
The use of frailty scoring to predict early physical activity levels after cardiac surgery
YS Abdullahi, MY Salmasi, M Moscarelli, A Parlanti, M Marotta, E Varone, ...
The Annals of Thoracic Surgery 111 (1), 36-43, 2021
122021
Fabrication of silver nanoparticles with cotton for antibacterial wound dressing
MubarakAli, D, ArunKumar, J, R Sheriff, M, Pandiaraj, D, SheikSyedIshack, ...
Pharmaceutical Nanotechnology 1 (1), 78-82, 2013
11*2013
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