| From expression footprints to causal pathways: contextualizing large signaling networks with CARNIVAL A Liu, P Trairatphisan, E Gjerga, A Didangelos, J Barratt, ... NPJ systems biology and applications 5 (1), 40, 2019 | 107 | 2019 |
| Identification of SARS-CoV-2–induced pathways reveals drug repurposing strategies N Han, W Hwang, K Tzelepis, P Schmerer, E Yankova, M MacMahon, ... Science Advances 7 (27), eabh3032, 2021 | 43 | 2021 |
| Prediction and mechanistic analysis of drug-induced liver injury (DILI) based on chemical structure A Liu, M Walter, P Wright, A Bartosik, D Dolciami, A Elbasir, H Yang, ... Biology direct 16, 1-15, 2021 | 36 | 2021 |
| Using chemical and biological data to predict drug toxicity A Liu, S Seal, H Yang, A Bender SLAS Discovery 28 (3), 53-64, 2023 | 18 | 2023 |
| DILI C : An AI-Based Classifier to Search for Drug-Induced Liver Injury Literature S Rathee, M MacMahon, A Liu, NM Katritsis, G Youssef, W Hwang, ... Frontiers in Genetics 13, 867946, 2022 | 6 | 2022 |
| Deriving time-concordant event cascades from gene expression data: A case study for Drug-Induced Liver Injury (DILI) A Liu, N Han, J Munoz-Muriedas, A Bender PLOS Computational Biology 18 (6), e1010148, 2022 | 3 | 2022 |
| scRNA-Seq-based drug repurposing targeting idiopathic pulmonary fibrosis (IPF) A Liu, JH Lee, N Han, A Bender bioRxiv, 2022.09. 17.508360, 2022 | 1 | 2022 |
| MAVEN: compound mechanism of action analysis and visualisation using transcriptomics and compound structure data in R/Shiny L Hosseini-Gerami, R Hernansaiz Ballesteros, A Liu, H Broughton, ... BMC bioinformatics 24 (1), 344, 2023 | | 2023 |
| Using transcriptomic data to detect, understand, and treat injury in the context of drug toxicity and fibrotic disease A Liu | | 2023 |
| Identification of potential biomarker candidates of drug-induced vascular injury (DIVI) in rats using gene expression and histopathology data A Liu, J Munoz-Muriedas, A Bender, DA Dalmas bioRxiv, 2022.08. 24.505120, 2022 | | 2022 |
| dialogi: Utilising NLP with chemical and disease similarities to drive the identification of Drug-Induced Liver Injury literature NM Katritsis, A Liu, G Youssef, S Rathee, M MacMahon, W Hwang, ... Frontiers in Genetics 13, 894209, 2022 | | 2022 |
| Relating early cellular events to Drug-Induced Liver Injury (DILI) using time-resolved transcriptomic and histopathology data A Liu, N Han, J Munoz-Muriedas, A Bender Toxicology Letters 350, S124, 2021 | | 2021 |
| Inferring longitudinal cascades of mechanistic events in drug-induced liver injury from transcriptomic and histopathology data using sequential pattern and rule mining A Liu, A Bender, J Munoz-Muriedas NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY 394 (SUPPL 1), S18-S18, 2021 | | 2021 |
| Identification of SARS-CoV-2 induced pathways reveal drug repurposing strategies (preprint) N Han, W Hwang, K Tzelepis, P Schmerer, E Yankova, M MacMahon, ... | | 2020 |
