David Arenillas
David Arenillas
UBC, Centre for Molecular Medicine and Theraputics, CFRI
Verified email at cmmt.ubc.ca - Homepage
Cited by
Cited by
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
Nucleic acids research 46 (D1), D260-D266, 2017
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
A Mathelier, X Zhao, AW Zhang, F Parcy, R Worsley-Hunt, DJ Arenillas, ...
Nucleic acids research 42 (D1), D142-D147, 2013
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ...
Nucleic acids research 44 (D1), D110-D115, 2015
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
E Portales-Casamar, S Thongjuea, AT Kwon, D Arenillas, X Zhao, ...
Nucleic acids research 38 (suppl_1), D105-D110, 2009
database of
E Portales-casamar, S Thongjuea, AT Kwon, D Arenillas, X Zhao, E Valen, ...
Global mapping of binding sites for Nrf2 identifies novel targets in cell survival response through ChIP-Seq profiling and network analysis
D Malhotra, E Portales-Casamar, A Singh, S Srivastava, D Arenillas, ...
Nucleic acids research 38 (17), 5718-5734, 2010
oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes
SJ Ho Sui, JR Mortimer, DJ Arenillas, J Brumm, CJ Walsh, BP Kennedy, ...
Nucleic acids research 33 (10), 3154-3164, 2005
oPOSSUM-3: advanced analysis of regulatory motif over-representation across genes or ChIP-Seq datasets
AT Kwon, DJ Arenillas, RW Hunt, WW Wasserman
G3: Genes| Genomes| Genetics 2 (9), 987-1002, 2012
oPOSSUM: integrated tools for analysis of regulatory motif over-representation
SJ Ho Sui, DL Fulton, DJ Arenillas, AT Kwon, WW Wasserman
Nucleic acids research 35 (suppl_2), W245-W252, 2007
The PAZAR database of gene regulatory information coupled to the ORCA toolkit for the study of regulatory sequences
E Portales-Casamar, D Arenillas, J Lim, MI Swanson, S Jiang, ...
Nucleic acids research 37 (suppl_1), D54-D60, 2008
In silico detection of sequence variations modifying transcriptional regulation
MC Andersen, PG Engström, S Lithwick, D Arenillas, P Eriksson, ...
PLoS computational biology 4 (1), e5, 2008
Systems biology evaluation of immune responses induced by human host defence peptide LL-37 in mononuclear cells
N Mookherjee, P Hamill, J Gardy, D Blimkie, R Falsafi, A Chikatamarla, ...
Molecular bioSystems 5 (5), 483-496, 2009
Mechanisms underlying p53 regulation of PIK3CA transcription in ovarian surface epithelium and in ovarian cancer
A Astanehe, D Arenillas, WW Wasserman, PCK Leung, SE Dunn, ...
J Cell Sci 121 (5), 664-674, 2008
A SNP in the HTT promoter alters NF-κB binding and is a bidirectional genetic modifier of Huntington disease
K Bečanović, A Nørremølle, SJ Neal, C Kay, JA Collins, D Arenillas, T Lilja, ...
Nature neuroscience 18 (6), 807, 2015
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals
M Lizio, J Harshbarger, I Abugessaisa, S Noguchi, A Kondo, J Severin, ...
Nucleic acids research, gkw995, 2016
A regulatory toolbox of MiniPromoters to drive selective expression in the brain
E Portales-Casamar, DJ Swanson, L Liu, CN de Leeuw, KG Banks, ...
Proceedings of the National Academy of Sciences 107 (38), 16589-16594, 2010
MIR@ NT@ N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model
A Le Béchec, E Portales-Casamar, G Vetter, M Moes, PJ Zindy, A Saumet, ...
BMC bioinformatics 12 (1), 67, 2011
Cis-regulatory somatic mutations and gene-expression alteration in B-cell lymphomas
A Mathelier, C Lefebvre, AW Zhang, DJ Arenillas, J Ding, WW Wasserman, ...
Genome biology 16 (1), 84, 2015
YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses
C Chen, W Shi, BP Balaton, AM Matthews, Y Li, DJ Arenillas, A Mathelier, ...
Scientific reports 6, 37324, 2016
GeneYenta: a phenotypeBased rare disease case matching tool based on online dating algorithms for the acceleration of exome interpretation
MM Gottlieb, DJ Arenillas, S Maithripala, ZD Maurer, M TarailoGraovac, ...
Human mutation 36 (4), 432-438, 2015
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