Thomas Manke

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Fidel RamirezBoehringer IngelheimVerifisert e-postadresse på boehringer-ingelheim.com
Björn GrüningUniversity of FreiburgVerifisert e-postadresse på informatik.uni-freiburg.de
Martin VingronMax-Planck-Institut für molekulare GenetikVerifisert e-postadresse på molgen.mpg.de
Vivek BhardwajAssistant Professor at Utrecht UniversityVerifisert e-postadresse på uu.nl
Devon P RyanGenedata AGVerifisert e-postadresse på dpryan.com
Asifa AkhtarMax Planck Institute of Immunobiology and EpigeneticsVerifisert e-postadresse på ie-freiburg.mpg.de
Fabian KilpertEssen University HospitalVerifisert e-postadresse på uk-essen.de
Steffen HeyneRocheVerifisert e-postadresse på roche.com
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgVerifisert e-postadresse på informatik.uni-freiburg.de
Andreas S. RichterGenedata AGVerifisert e-postadresse på genedata.com
Hugh ShanahanProfessor of Open Science, Royal Holloway, University of LondonVerifisert e-postadresse på rhul.ac.uk
Shoji HashimotoKEKVerifisert e-postadresse på kek.jp
Akira UkawaCenter for World Premier International Research Center InitiativeVerifisert e-postadresse på ccs.tsukuba.ac.jp
Aydan Bulut KarsliogluMax Planck Institute for Molecular GeneticsVerifisert e-postadresse på molgen.mpg.de
Philip RosenstielProfessor of Medicine, Kiel UniversityVerifisert e-postadresse på mucosa.de
Kin Chung LamMGH/ Harvard Medical SchoolVerifisert e-postadresse på ie-freiburg.mpg.de
Jörn WalterProfessor of Genetics & Epigenetics, Saarland UniveristyVerifisert e-postadresse på mx.uni-saarland.de
Stefan SchreiberKielVerifisert e-postadresse på mucosa.de
Inti Alberto De la Rosa VelazquezHead of Genomics Core Facility, Helmholtz Zentrum MünchenVerifisert e-postadresse på helmholtz-muenchen.de
Tugce AktasResearch Group Leader, Max Planck Institute for Molecular Genetics, BerlinVerifisert e-postadresse på molgen.mpg.de

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Thomas Manke

Head of Bioinformatics and Deep-Sequencing Unit, Max Planck Institute for Immunobiology and

Verifisert e-postadresse på ie-freiburg.mpg.de

Computational Biology Bioinformatics Epigenetics Regulatory Networks Lattice Theory


Tittel Sorter etter sitater Sorter etter år Sorter etter tittel	Sitert av Sitert av	År
deepTools2: a next generation web server for deep-sequencing data analysis F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ... Nucleic acids research 44 (Web Server issue), W160, 2016	6122	2016
deepTools: a flexible platform for exploring deep-sequencing data F Ramírez, F Dündar, S Diehl, BA Grüning, T Manke Nucleic acids research 42 (W1), W187-W191, 2014	2855	2014
High-resolution TADs reveal DNA sequences underlying genome organization in flies F Ramírez, V Bhardwaj, L Arrigoni, KC Lam, BA Grüning, J Villaveces, ... Nature communications 9 (1), 189, 2018	773	2018
The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery HG Stunnenberg, S Abrignani, D Adams, M de Almeida, L Altucci, V Amin, ... Cell 167 (5), 1145-1149, 2016	546	2016
DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome T Aktaş, İ Avşar Ilık, D Maticzka, V Bhardwaj, C Pessoa Rodrigues, ... Nature 544 (7648), 115-119, 2017	499	2017
Suv39h-dependent H3K9me3 marks intact retrotransposons and silences LINE elements in mouse embryonic stem cells A Bulut-Karslioglu, A Inti, F Ramirez, M Barenboim, M Onishi-Seebacher, ... Molecular cell 55 (2), 277-290, 2014	347	2014
pyGenomeTracks: reproducible plots for multivariate genomic datasets L Lopez-Delisle, L Rabbani, J Wolff, V Bhardwaj, R Backofen, B Grüning, ... Bioinformatics 37 (3), 422-423, 2021	322	2021
Robustness and network evolution—an entropic principle L Demetrius, T Manke Physica A: Statistical Mechanics and its Applications 346 (3-4), 682-696, 2005	274	2005
Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization J Wolff, L Rabbani, R Gilsbach, G Richard, T Manke, R Backofen, ... Nucleic acids research 48 (W1), W177-W184, 2020	255	2020
Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs M Thomas-Chollier, A Hufton, M Heinig, S O'keeffe, NE Masri, HG Roider, ... Nature protocols 6 (12), 1860-1869, 2011	251	2011
Predicting transcription factor affinities to DNA from a biophysical model HG Roider, A Kanhere, T Manke, M Vingron Bioinformatics 23 (2), 134-141, 2007	248	2007
A genome-wide association study identifies GLT6D1 as a susceptibility locus for periodontitis AS Schaefer, GM Richter, M Nothnagel, T Manke, H Dommisch, G Jacobs, ... Human molecular genetics 19 (3), 553-562, 2010	229	2010
Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization J Wolff, V Bhardwaj, S Nothjunge, G Richard, G Renschler, R Gilsbach, ... Nucleic acids research 46 (W1), W11-W16, 2018	204	2018
Epigenomic profiling of human CD4+ T cells supports a linear differentiation model and highlights molecular regulators of memory development P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M De Almeida, ... Immunity 45 (5), 1148-1161, 2016	204	2016
The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle HJ Warnatz, D Schmidt, T Manke, I Piccini, M Sultan, T Borodina, ... Journal of Biological Chemistry 286 (26), 23521-23532, 2011	203	2011
Community-driven data analysis training for biology B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ... Cell systems 6 (6), 752-758. e1, 2018	200	2018
A transcription factor–based mechanism for mouse heterochromatin formation A Bulut-Karslioglu, V Perrera, M Scaranaro, IA De La Rosa-velazquez, ... Nature structural & molecular biology 19 (10), 1023-1030, 2012	196	2012
Nuclear architecture organized by Rif1 underpins the replication-timing program R Foti, S Gnan, D Cornacchia, V Dileep, A Bulut-Karslioglu, S Diehl, ... Molecular cell 61 (2), 260-273, 2016	189	2016
PASTAA: identifying transcription factors associated with sets of co-regulated genes HG Roider, T Manke, S O'Keeffe, M Vingron, SA Haas Bioinformatics 25 (4), 435-442, 2009	177	2009
Mutational characterization of the bile acid receptor TGR5 in primary sclerosing cholangitis JR Hov, V Keitel, JK Laerdahl, L Spomer, E Ellinghaus, A ElSharawy, ... PloS one 5 (8), e12403, 2010	147	2010

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