Andrey Palyanov
Andrey Palyanov
A.P. Ershov Intitute of Informatics Systems
Verified email at - Homepage
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OpenWorm: an open-science approach to modeling Caenorhabditis elegans
B Szigeti, P Gleeson, M Vella, S Khayrulin, A Palyanov, J Hokanson, ...
Frontiers in computational neuroscience 8, 137, 2014
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans
GP Sarma, CW Lee, T Portegys, V Ghayoomie, T Jacobs, B Alicea, ...
Philosophical Transactions of the Royal Society B 373 (1758), 20170382, 2018
AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site
AV Kochetov, A Palyanov, II Titov, D Grigorovich, A Sarai, NA Kolchanov
BMC bioinformatics 8 (1), 1-7, 2007
Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment
A Palyanov, S Khayrulin, SD Larson, A Dibert
In silico biology 11 (3, 4), 137-147, 2012
Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue
A Palyanov, S Khayrulin, SD Larson
Advances in Engineering Software 98, 1-11, 2016
Hydrodynamic description of protein folding
SF Chekmarev, AY Palyanov, M Karplus
Physical review letters 100 (1), 018107, 2008
Three-dimensional simulation of the Caenorhabditis elegans body and muscle cells in liquid and gel environments for behavioural analysis
A Palyanov, S Khayrulin, SD Larson
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
A lattice protein with an amyloidogenic latent state: Stability and folding kinetics
AY Palyanov, SV Krivov, M Karplus, SF Chekmarev
The Journal of Physical Chemistry B 111 (10), 2675-2687, 2007
Insights from the HuR-interacting transcriptome: ncRNAs, ubiquitin pathways, and patterns of secondary structure dependent RNA interactions
G St Laurent, D Shtokalo, M Heydarian, A Palyanov, D Babiy, J Zhou, ...
Molecular genetics and genomics 287 (11), 867-879, 2012
The NeuroML C. elegans connectome
T Busbice, P Gleeson, S Khayrulin, M Cantarelli, A Dibert, G Idili, ...
Neuroinf. Abstract book, 82-83, 2012
The OpenWorm Project: currently available resources and future plans
P Gleeson, M Cantarelli, M Currie, J Hokanson, G Idili, S Khayrulin, ...
BMC neuroscience 16 (1), 1-2, 2015
Some details of signal propagation in the nervous system of C. elegans
AY Palyanov, AS Ratushnyak
Russian Journal of Genetics: Applied Research 5 (6), 642-649, 2015
On Separation between Metric Observers in Segal’s Compact Cosmos
A Levichev, A Palyanov
Journal of Modern Physics 6 (14), 2040, 2015
Sibernetic: A software complex based on the PCI SPH algorithm aimed at simulation problems in biomechanics
AY Palyanov, SS Khayrulin
Russian Journal of Genetics: Applied Research 5 (6), 635-641, 2015
Integration of predictive-corrective incompressible SPH and Hodgkin-Huxley based models in the OpenWorm in silico model of C. elegans
M Vella, A Palyanov, P Gleeson, S Khayrulin
BMC Neuroscience 14 (1), 1-1, 2013
OpenWorm: an open-science approach to modeling caenorhabditis elegans. Frontiers Computational Neuroscience 2014; 8
B Szigeti, P Gleeson, M Vella, S Khayrulin, A Palyanov, J Hokanson, ...
On a modification of theoretical basis of the Penrose-Hameroff model of consciousness
AV Levichev, AY Palyanov
MM-HPC-BBB-2014 Novosibirsk, RUSSIA June 24–25, 2014, 51, 2014
Managing complexity in multi-algorithm, multi-scale biological simulations: an integrated software engineering and neuroinformatics approach
G Idili, M Cantarelli, M Buibas, T Busbice, J Coggan, C Grove, S Khayrulin, ...
Frontiers in Neuroinformatics Conference Abstract: 4th INCF Congress of …, 2011
Structural memory of a lattice protein
AY Palyanov, II Titov
Proceedings of the fourth international conference on bioinformatics of …, 2004
How a protein knots: folding simulation of lattice proteins
II Titov, AY Palyanov
Biophysics 48 (1), 133-140, 2003
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