| OpenWorm: an open-science approach to modeling Caenorhabditis elegans B Szigeti, P Gleeson, M Vella, S Khayrulin, A Palyanov, J Hokanson, ... Frontiers in computational neuroscience 8, 137, 2014 | 113 | 2014 |
| AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site AV Kochetov, A Palyanov, II Titov, D Grigorovich, A Sarai, NA Kolchanov BMC bioinformatics 8 (1), 318, 2007 | 49 | 2007 |
| Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment A Palyanov, S Khayrulin, SD Larson, A Dibert In silico biology 11 (3, 4), 137-147, 2012 | 44 | 2012 |
| Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue A Palyanov, S Khayrulin, SD Larson Advances in Engineering Software 98, 1-11, 2016 | 33 | 2016 |
| OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans GP Sarma, CW Lee, T Portegys, V Ghayoomie, T Jacobs, B Alicea, ... Philosophical Transactions of the Royal Society B 373 (1758), 20170382, 2018 | 25 | 2018 |
| Hydrodynamic description of protein folding SF Chekmarev, AY Palyanov, M Karplus Physical review letters 100 (1), 018107, 2008 | 23 | 2008 |
| Three-dimensional simulation of the Caenorhabditis elegans body and muscle cells in liquid and gel environments for behavioural analysis A Palyanov, S Khayrulin, SD Larson Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018 | 17 | 2018 |
| Insights from the HuR-interacting transcriptome: ncRNAs, ubiquitin pathways, and patterns of secondary structure dependent RNA interactions G St Laurent, D Shtokalo, M Heydarian, A Palyanov, D Babiy, J Zhou, ... Molecular genetics and genomics 287 (11-12), 867-879, 2012 | 12 | 2012 |
| A lattice protein with an amyloidogenic latent state: Stability and folding kinetics AY Palyanov, SV Krivov, M Karplus, SF Chekmarev The Journal of Physical Chemistry B 111 (10), 2675-2687, 2007 | 12 | 2007 |
| On Separation between Metric Observers in Segal’s Compact Cosmos A Levichev, A Palyanov Journal of Modern Physics 6 (14), 2040, 2015 | 6 | 2015 |
| The neuroml c. elegans connectome T Busbice, P Gleeson, S Khayrulin, M Cantarelli, A Dibert, G Idili, ... Neuroinf. Abstract book, 82-83, 2012 | 6 | 2012 |
| The OpenWorm Project: currently available resources and future plans P Gleeson, M Cantarelli, M Currie, J Hokanson, G Idili, S Khayrulin, ... BMC neuroscience 16 (1), 1-2, 2015 | 5 | 2015 |
| Some details of signal propagation in the nervous system of C. elegans AY Palyanov, AS Ratushnyak Russian Journal of Genetics: Applied Research 5 (6), 642-649, 2015 | 5 | 2015 |
| Integration of predictive-corrective incompressible SPH and Hodgkin-Huxley based models in the OpenWorm in silico model of C. elegans M Vella, A Palyanov, P Gleeson, S Khayrulin BMC Neuroscience 14 (S1), P209, 2013 | 5 | 2013 |
| Sibernetic: a software complex based on the PCI SPH algorithm aimed at simulation problems in biomechanics AY Palyanov, SS Khayrulin Russian Journal of Genetics: Applied Research 5 (6), 635-641, 2015 | 4 | 2015 |
| On a modification of the theoretical basis of the Penrose-Hameroff model of consciousness A Levichev, A Palyanov MM-HPC-BBB-2014 Novosibirsk, RUSSIA June 24–25, 2014, 51, 2014 | 3 | 2014 |
| Managing complexity in multi-algorithm, multi-scale biological simulations: an integrated software engineering and neuroinformatics approach G Idili, M Cantarelli, M Buibas, T Busbice, J Coggan, C Grove, S Khayrulin, ... Frontiers in Neuroinformatics Conference Abstract: 4th INCF Congress of …, 2011 | 3 | 2011 |
| Structural memory of a lattice protein AY Palyanov, II Titov Proceedings of the fourth international conference on bioinformatics of …, 2004 | 2 | 2004 |
| How a protein knots: folding simulation of lattice proteins II Titov, AY Palyanov Biophysics 48 (1), 133-140, 2003 | 2 | 2003 |
| Realistic 3D simulation of C. elegans swimming and crawling with Sibernetic environment AY Palyanov, SS Khayrulin Mathematical Modeling and High Performance Computing in Bioinformatics …, 2016 | 1 | 2016 |
Sergey KhayrulinA.P. Ershov INSTITUTE OF INFORMATICS SYSTEMS Russian Academy of Sciences Siberian BranchVerified email at iis.nsk.su
