Stephen D Larson
Stephen D Larson
OpenWorm Foundation
Verified email at openworm.org - Homepage
Title
Cited by
Cited by
Year
Sensory maps in the olfactory cortex defined by long-range viral tracing of single neurons
S Ghosh, SD Larson, H Hefzi, Z Marnoy, T Cutforth, K Dokka, KK Baldwin
Nature 472 (7342), 217-220, 2011
2542011
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience
WJ Bug, GA Ascoli, JS Grethe, A Gupta, C Fennema-Notestine, AR Laird, ...
Neuroinformatics 6 (3), 175-194, 2008
1582008
OpenWorm: an open-science approach to modeling Caenorhabditis elegans
B Szigeti, P Gleeson, M Vella, S Khayrulin, A Palyanov, J Hokanson, ...
Frontiers in computational neuroscience 8, 137, 2014
1302014
Digital atlasing and standardization in the mouse brain
M Hawrylycz, RA Baldock, A Burger, T Hashikawa, GA Johnson, ...
PLoS computational biology 7 (2), e1001065, 2011
992011
The cell centered database project: an update on building community resources for managing and sharing 3D imaging data
ME Martone, J Tran, WW Wong, J Sargis, L Fong, S Larson, SP Lamont, ...
Journal of structural biology 161 (3), 220-231, 2008
992008
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans
GP Sarma, CW Lee, T Portegys, V Ghayoomie, T Jacobs, B Alicea, ...
Philosophical Transactions of the Royal Society B 373 (1758), 20170382, 2018
752018
NeuroLex. org: an online framework for neuroscience knowledge
SD Larson, M Martone
Frontiers in neuroinformatics 7, 18, 2013
662013
Ontologies for neuroscience: what are they and what are they good for?
SD Larson, ME Martone
Frontiers in neuroscience 3, 7, 2009
562009
Development and use of ontologies inside the neuroscience information framework: a practical approach
FT Imam, S Larson, JS Grethe, A Gupta, A Bandrowski, ME Martone
Frontiers in genetics 3, 111, 2012
512012
Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment
A Palyanov, S Khayrulin, SD Larson, A Dibert
In silico biology 11 (3, 4), 137-147, 2012
462012
Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue
A Palyanov, S Khayrulin, SD Larson
Advances in Engineering Software 98, 1-11, 2016
372016
Open source brain: a collaborative resource for visualizing, analyzing, simulating, and developing standardized models of neurons and circuits
P Gleeson, M Cantarelli, B Marin, A Quintana, M Earnshaw, S Sadeh, ...
Neuron 103 (3), 395-411. e5, 2019
352019
A formal ontology of subcellular neuroanatomy
SD Larson, LL Fong, A Gupta, C Condit, WJ Bug, ME Martone
Frontiers in neuroinformatics 1, 3, 2007
332007
c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans
P Gleeson, D Lung, R Grosu, R Hasani, SD Larson
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
322018
Unit testing, model validation, and biological simulation
GP Sarma, TW Jacobs, MD Watts, SV Ghayoomie, SD Larson, RC Gerkin
F1000Research 5, 2016
202016
Three-dimensional simulation of the Caenorhabditis elegans body and muscle cells in liquid and gel environments for behavioural analysis
A Palyanov, S Khayrulin, SD Larson
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
192018
A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework
J Cachat, A Bandrowski, JS Grethe, A Gupta, V Astakhov, F Imam, ...
International review of neurobiology 103, 39-68, 2012
192012
An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy.
L Fong, SD Larson, A Gupta, C Condit, WJ Bug, L Chen, R West, ...
OWLED, 2007
132007
DevoWorm: differentiation waves and computation in C. elegans embryogenesis
B Alicea, S McGrew, R Gordon, S Larson, T Warrington, M Watts
bioRxiv, 009993, 2014
122014
SciCrunch: a cooperative and collaborative data and resource discovery platform for scientific communities
JS Grethe, A Bandrowski, DE Banks, C Condit, A Gupta, SD Larson, Y Li, ...
Neuroinformatics, 2014
112014
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Articles 1–20