Stephen D Larson
Stephen D Larson
OpenWorm Foundation
Verified email at - Homepage
Cited by
Cited by
Sensory maps in the olfactory cortex defined by long-range viral tracing of single neurons
S Ghosh, SD Larson, H Hefzi, Z Marnoy, T Cutforth, K Dokka, KK Baldwin
Nature 472 (7342), 217-220, 2011
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience
WJ Bug, GA Ascoli, JS Grethe, A Gupta, C Fennema-Notestine, AR Laird, ...
Neuroinformatics 6 (3), 175-194, 2008
OpenWorm: an open-science approach to modeling Caenorhabditis elegans
B Szigeti, P Gleeson, M Vella, S Khayrulin, A Palyanov, J Hokanson, ...
Frontiers in computational neuroscience 8, 137, 2014
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans
GP Sarma, CW Lee, T Portegys, V Ghayoomie, T Jacobs, B Alicea, ...
Philosophical Transactions of the Royal Society B 373 (1758), 20170382, 2018
Digital atlasing and standardization in the mouse brain
M Hawrylycz, RA Baldock, A Burger, T Hashikawa, GA Johnson, ...
PLoS computational biology 7 (2), e1001065, 2011
The cell centered database project: an update on building community resources for managing and sharing 3D imaging data
ME Martone, J Tran, WW Wong, J Sargis, L Fong, S Larson, SP Lamont, ...
Journal of structural biology 161 (3), 220-231, 2008
NeuroLex. org: an online framework for neuroscience knowledge
SD Larson, ME Martone
Frontiers in neuroinformatics 7, 18, 2013
Ontologies for neuroscience: what are they and what are they good for?
SD Larson, ME Martone
Frontiers in neuroscience, 7, 2009
Development and use of ontologies inside the neuroscience information framework: a practical approach
FT Imam, SD Larson, A Bandrowski, JS Grethe, A Gupta, ME Martone
Frontiers in genetics 3, 111, 2012
Open source brain: a collaborative resource for visualizing, analyzing, simulating, and developing standardized models of neurons and circuits
P Gleeson, M Cantarelli, B Marin, A Quintana, M Earnshaw, S Sadeh, ...
Neuron 103 (3), 395-411. e5, 2019
Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment
A Palyanov, S Khayrulin, SD Larson, A Dibert
In silico biology 11 (3-4), 137-147, 2012
c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans
P Gleeson, D Lung, R Grosu, R Hasani, SD Larson
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue
A Palyanov, S Khayrulin, SD Larson
Advances in Engineering Software 98, 1-11, 2016
A formal ontology of subcellular neuroanatomy
SD Larson, LL Fong, A Gupta, C Condit, WJ Bug, ME Martone
Frontiers in neuroinformatics, 3, 2007
Three-dimensional simulation of the Caenorhabditis elegans body and muscle cells in liquid and gel environments for behavioural analysis
A Palyanov, S Khayrulin, SD Larson
Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018
Unit testing, model validation, and biological simulation
GP Sarma, TW Jacobs, MD Watts, SV Ghayoomie, SD Larson, RC Gerkin
F1000Research 5, 2016
A survey of the neuroscience resource landscape: perspectives from the neuroscience information framework
J Cachat, A Bandrowski, JS Grethe, A Gupta, V Astakhov, F Imam, ...
International review of neurobiology 103, 39-68, 2012
Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future
International Arabidopsis Informatics Consortium, C Doherty, J Friesner, ...
Plant Direct 3 (1), e00109, 2019
The smart atlas: spatial and semantic strategies for multiscale integration of brain data
ME Martone, I Zaslavsky, A Gupta, A Memon, J Tran, W Wong, L Fong, ...
Anatomy ontologies for bioinformatics, 267-286, 2008
An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy.
L Fong, SD Larson, A Gupta, C Condit, WJ Bug, L Chen, R West, ...
OWLED, 2007
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