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Jonathan Doye
Jonathan Doye
Department of Chemistry, University of Oxford
Verified email at chem.ox.ac.uk - Homepage
Title
Cited by
Cited by
Year
Global optimization by basin-hopping and the lowest energy structures of Lennard-Jones clusters containing up to 110 atoms
DJ Wales, JPK Doye
The Journal of Physical Chemistry A 101 (28), 5111-5116, 1997
31721997
The effect of the range of the potential on the structures of clusters
JPK Doye, DJ Wales, RS Berry
The Journal of chemical physics 103 (10), 4234-4249, 1995
4611995
Global minima for transition metal clusters described by Sutton–Chen potentials
JPK Doye, DJ Wales
New journal of chemistry 22 (7), 733-744, 1998
4591998
On the biophysics and kinetics of toehold-mediated DNA strand displacement
N Srinivas, TE Ouldridge, P Šulc, JM Schaeffer, B Yurke, AA Louis, ...
Nucleic acids research 41 (22), 10641-10658, 2013
4112013
Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model
TE Ouldridge, AA Louis, JPK Doye
The Journal of chemical physics 134 (8), 02B627, 2011
3862011
Energy landscapes: from clusters to biomolecules
DJ Wales, JPK Doye, MA Miller, PN Mortenson, TR Walsh
Advances in Chemical Physics 115, 1-111, 2000
3252000
The double-funnel energy landscape of the 38-atom Lennard-Jones cluster
JPK Doye, MA Miller, DJ Wales
The Journal of Chemical Physics 110 (14), 6896-6906, 1999
3211999
The Cambridge cluster database
DJ Wales, JPK Doye, A Dullweber, MP Hodges, FY Naumkin, F Calvo, ...
3082001
Structural consequences of the range of the interatomic potential a menagerie of clusters
JPK Doye, DJ Wales
Journal of the Chemical Society, Faraday Transactions 93 (24), 4233-4243, 1997
3011997
Thermodynamics of global optimization
JPK Doye, DJ Wales
Physical review letters 80 (7), 1357, 1998
2761998
Evolution of the potential energy surface with size for Lennard-Jones clusters
JPK Doye, MA Miller, DJ Wales
The Journal of Chemical Physics 111 (18), 8417-8428, 1999
2701999
Sequence-dependent thermodynamics of a coarse-grained DNA model
P Šulc, F Romano, TE Ouldridge, L Rovigatti, JPK Doye, AA Louis
The Journal of chemical physics 137 (13), 135101, 2012
2502012
Network topology of a potential energy landscape: A static scale-free network
JPK Doye
Physical review letters 88 (23), 238701, 2002
2432002
Thermodynamics and the global optimization of Lennard-Jones clusters
JPK Doye, DJ Wales, MA Miller
The Journal of Chemical Physics 109 (19), 8143-8153, 1998
2271998
DNA hybridization kinetics: zippering, internal displacement and sequence dependence
TE Ouldridge, P Šulc, F Romano, JPK Doye, AA Louis
Nucleic acids research 41 (19), 8886-8895, 2013
2182013
Introducing improved structural properties and salt dependence into a coarse-grained model of DNA
BEK Snodin, F Randisi, M Mosayebi, P Šulc, JS Schreck, F Romano, ...
The Journal of chemical physics 142 (23), 06B613_1, 2015
2132015
Tetrahedral global minimum for the 98-atom Lennard-Jones cluster
RH Leary, JPK Doye
Physical Review E 60 (6), R6320, 1999
2131999
Identifying communities within energy landscapes
CP Massen, JPK Doye
Physical Review E 71 (4), 046101, 2005
2122005
Saddle points and dynamics of Lennard-Jones clusters, solids, and supercooled liquids
JPK Doye, DJ Wales
The Journal of Chemical Physics 116 (9), 3777-3788, 2002
2092002
Reversible self-assembly of patchy particles into monodisperse icosahedral clusters
AW Wilber, JPK Doye, AA Louis, EG Noya, MA Miller, P Wong
The Journal of chemical physics 127 (8), 08B618, 2007
2082007
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