| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome Biology 20 (1), 2019 | 400 | 2019 |
| Identifying Antimicrobial Peptides using Word Embedding with Deep Recurrent Neural Networks MN Hamid, I Friedberg Bioinformatics 35 (12), 2019 | 117 | 2019 |
| MetaMiner: a scalable peptidogenomics approach for discovery of ribosomal peptide natural products with blind modifications from microbial communities L Cao, A Gurevich, KL Alexander, CB Naman, T Leão, E Glukhov, ... Cell systems 9 (6), 600-608. e4, 2019 | 74 | 2019 |
| Applications of blockchain in the financial sector and a peer-to-peer global barter web K Ikeda, MN Hamid Advances in Computers 111, 99-120, 2018 | 53 | 2018 |
| Novel antimicrobial peptide discovery using machine learning and biophysical selection of minimal bacteriocin domains FR Fields, SD Freed, KE Carothers, MN Hamid, DE Hammers, JN Ross, ... Drug Development Research, 1-9, 2019 | 50 | 2019 |
| Chikungunya virus in febrile humans and Aedes aegypti mosquitoes, Yucatan, Mexico N Cigarroa-Toledo, BJ Blitvich, RC Cetina-Trejo, LG Talavera-Aguilar, ... Emerging Infectious Diseases 22 (10), 1804, 2016 | 39 | 2016 |
| Transfer learning improves antibiotic resistance class prediction MN Hamid, I Friedberg Biorxiv, 2020.04. 17.047316, 2020 | 7 | 2020 |
| MetaMiner: A Scalable Peptidogenomics Approach for Discovery of Ribosomal Peptide Natural Products with Blind Modifications from Microbial Communities. Cell Systems. 2019; 9 (6 … L Cao, A Gurevich, KL Alexander, CB Naman, T Leão, E Glukhov, ... | 6 | |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens. bioRxiv. 2019: 653105 N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... doi 10 (653105), 653105, 0 | 5 | |
| Transfer learning towards combating antibiotic resistance MN Hamid Iowa State University, 2019 | 4 | 2019 |
| Reliable uncertainty estimate for antibiotic resistance classification with Stochastic Gradient Langevin Dynamics MN Hamid, I Friedberg arXiv preprint arXiv:1811.11145, 2018 | 4 | 2018 |
| MetaRiPPquest: A peptidogenomics approach for the discovery of ribosomally synthesized and post-translationally modified peptides H Mohimani, A Gurevich, KL Alexander, CB Naman, T Leao, E Glukhov, ... BioRxiv, 227504, 2017 | 4 | 2017 |
| Bacteriocin detection with distributed biological sequence representation MN Hamid, I Friedberg International Conference on Machine Learning, Workshop on Computational Biology, 2017 | 2 | 2017 |
| Self-Attention based model for de-novo antibiotic resistant gene classification with enhanced reliability for Out of Distribution data detection MN Hamid, I Friedberg bioRxiv, 543272, 2019 | 1 | 2019 |
| Self-Attention based model forde-novoantibiotic resistant gene classification with enhanced reliability for Out of Distribution data detection M Hamid, I Friedberg | | 2019 |
| MOESM2 of The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, T Bergquist, A Lee, B Kacsoh, A Crocker, K Lewis, ... (No Title), 2019 | | 2019 |
| ENHANCED RELIABILITY FOR OUT OF DISTRIBUTION DATA DETECTION IN CLASSIFYING ANTIBIOTIC RESISTANCE GENES MN Hamid, I Friedberg Transfer learning towards combating antibiotic resistance 1001 (48106), 55, 2019 | | 2019 |
| Gene Co-expression Network analysis of Lung Squamous Cell Carcinoma data MN Hamid arXiv preprint arXiv:1804.01217, 2018 | | 2018 |
Iddo FriedbergAssociate Professor of Bioinformatics, Iowa State UniversityVerifisert e-postadresse på iastate.edu
