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Benjamin P Berman
Benjamin P Berman
Associate Professor, The Hebrew University of Jerusalem School of Medicine
Verified email at mail.huji.ac.il - Homepage
Title
Cited by
Cited by
Year
Comprehensive molecular portraits of human breast tumours
Brigham & Women’s Hospital & Harvard Medical School Chin Lynda 9 11 Park ...
Nature 490 (7418), 61-70, 2012
109552012
The genome sequence of Drosophila melanogaster
MD Adams, SE Celniker, RA Holt, CA Evans, JD Gocayne, ...
Science 287 (5461), 2185, 2000
81742000
Comprehensive molecular characterization of human colon and rectal cancer
Cancer Genome Atlas Network
Nature 487 (7407), 330, 2012
73422012
Integrated genomic analyses of ovarian carcinoma
D Bell, A Berchuck, M Birrer, J Chien, DW Cramer, F Dao, R Dhir, ...
Nature Publishing Group 474 (7353), 609-615, 2011
67672011
Comprehensive molecular characterization of clear cell renal cell carcinoma
Cancer Genome Atlas Research Network Analysis working group: Baylor College ...
Nature 499 (7456), 43-49, 2013
27852013
Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma
H Noushmehr, DJ Weisenberger, K Diefes, HS Phillips, K Pujara, ...
Cancer Cell 17 (5), 510-522, 2010
26962010
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1641*2020
The chromatin accessibility landscape of primary human cancers
MR Corces, JM Granja, S Shams, BH Louie, JA Seoane, W Zhou, ...
Science 362 (6413), eaav1898, 2018
9272018
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, ...
Proceedings of the National Academy of Sciences 99 (2), 757, 2002
7602002
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains
BP Berman, DJ Weisenberger, JF Aman, T Hinoue, Z Ramjan, Y Liu, ...
Nature genetics 44 (1), 40-46, 2012
6902012
Global analysis of patterns of gene expression during Drosophilaembryogenesis
P Tomancak, BP Berman, A Beaton, R Weiszmann, E Kwan, ...
Genome biology 8, 1-24, 2007
5302007
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review
S Misra, MA Crosby, CJ Mungall, BB Matthews, KS Campbell, P Hradecky, ...
Genome biology 3 (12), research0083, 2002
4592002
Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules
TK Kelly, Y Liu, FD Lay, G Liang, BP Berman, PA Jones
Genome research 22 (12), 2497-2506, 2012
4532012
Scientific workflow applications on Amazon EC2
G Juve, E Deelman, K Vahi, G Mehta, B Berriman, BP Berman, ...
E-Science Workshops, 2009 5th IEEE International Conference on, 59-66, 2009
3812009
Granulocyte-monocyte progenitors and monocyte-dendritic cell progenitors independently produce functionally distinct monocytes
A Yáñez, SG Coetzee, A Olsson, DE Muench, BP Berman, DJ Hazelett, ...
Immunity 47 (5), 890-902. e4, 2017
3612017
The psychencode project
S Akbarian, C Liu, JA Knowles, FM Vaccarino, PJ Farnham, GE Crawford, ...
Nature neuroscience 18 (12), 1707-1712, 2015
3222015
Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data
Y Liu, KD Siegmund, PW Laird, BP Berman
Genome biology 13, 1-14, 2012
2942012
Functional enhancers at the gene-poor 8q24 cancer-linked locus
L Jia, G Landan, M Pomerantz, R Jaschek, P Herman, D Reich, C Yan, ...
PLoS genetics 5 (8), e1000597, 2009
2912009
Exosomal microRNA transfer into macrophages mediates cellular postconditioning
G De Couto, R Gallet, L Cambier, E Jaghatspanyan, N Makkar, ...
Circulation 136 (2), 200-214, 2017
2852017
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila …
BP Berman, BD Pfeiffer, TR Laverty, SL Salzberg, GM Rubin, MB Eisen, ...
Genome biology 5, 1-24, 2004
2852004
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Articles 1–20