| Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins O Miyashita, JN Onuchic, PG Wolynes Proceedings of the National Academy of Sciences 100 (22), 12570-12575, 2003 | 576 | 2003 |
| Conformational transitions of adenylate kinase: switching by cracking PC Whitford, O Miyashita, Y Levy, JN Onuchic Journal of molecular biology 366 (5), 1661-1671, 2007 | 347 | 2007 |
| Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM F Tama, O Miyashita, CL Brooks Iii Journal of structural biology 147 (3), 315-326, 2004 | 269 | 2004 |
| Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis F Tama, O Miyashita, CL Brooks III Journal of molecular biology 337 (4), 985-999, 2004 | 262 | 2004 |
| Vibrational energy transfer in a protein molecule K Moritsugu, O Miyashita, A Kidera Physical review letters 85 (18), 3970, 2000 | 182 | 2000 |
| Simple energy landscape model for the kinetics of functional transitions in proteins O Miyashita, PG Wolynes, JN Onuchic The journal of physical chemistry B 109 (5), 1959-1969, 2005 | 136 | 2005 |
| Interprotein electron transfer from cytochrome c2 to photosynthetic reaction center: Tunneling across an aqueous interface O Miyashita, MY Okamura, JN Onuchic Proceedings of the National Academy of Sciences 102 (10), 3558-3563, 2005 | 113 | 2005 |
| Role of computational methods in going beyond X-ray crystallography to explore protein structure and dynamics A Srivastava, T Nagai, A Srivastava, O Miyashita, F Tama International journal of molecular sciences 19 (11), 3401, 2018 | 105 | 2018 |
| Macromolecular structures probed by combining single-shot free-electron laser diffraction with synchrotron coherent X-ray imaging M Gallagher-Jones, Y Bessho, S Kim, J Park, S Kim, D Nam, C Kim, Y Kim, ... Nature communications 5 (1), 3798, 2014 | 86 | 2014 |
| Temperature dependence of vibrational energy transfer in a protein molecule K Moritsugu, O Miyashita, A Kidera The Journal of Physical Chemistry B 107 (14), 3309-3317, 2003 | 83 | 2003 |
| Coupled motions in the SH2 and kinase domains of Csk control Src phosphorylation L Wong, SA Lieser, O Miyashita, M Miller, K Tasken, JN Onuchic, ... Journal of molecular biology 351 (1), 131-143, 2005 | 72 | 2005 |
| Normal-mode flexible fitting of high-resolution structure of biological molecules toward one-dimensional low-resolution data C Gorba, O Miyashita, F Tama Biophysical journal 94 (5), 1589-1599, 2008 | 70 | 2008 |
| Transition state and encounter complex for fast association of cytochrome c2 with bacterial reaction center O Miyashita, JN Onuchic, MY Okamura Proceedings of the National Academy of Sciences 101 (46), 16174-16179, 2004 | 64 | 2004 |
| Flexible fitting to cryo‐EM density map using ensemble molecular dynamics simulations O Miyashita, C Kobayashi, T Mori, Y Sugita, F Tama Journal of computational chemistry 38 (16), 1447-1461, 2017 | 58 | 2017 |
| Biased coarse-grained molecular dynamics simulation approach for flexible fitting of X-ray structure into cryo electron microscopy maps I Grubisic, MN Shokhirev, M Orzechowski, O Miyashita, F Tama Journal of structural biology 169 (1), 95-105, 2010 | 55 | 2010 |
| Dynamic coupling between the SH2 domain and active site of the COOH terminal Src kinase, Csk L Wong, S Lieser, B Chie-Leon, O Miyashita, B Aubol, J Shaffer, ... Journal of molecular biology 341 (1), 93-106, 2004 | 50 | 2004 |
| Crystal molecular dynamics simulations to speed up MM/PB (GB) SA evaluation of binding free energies of di‐mannose deoxy analogs with P51G‐m4‐Cyanovirin‐N II Vorontsov, O Miyashita Journal of computational chemistry 32 (6), 1043-1053, 2011 | 48 | 2011 |
| Solution and crystal molecular dynamics simulation study of m4-cyanovirin-N mutants complexed with di-mannose II Vorontsov, O Miyashita Biophysical journal 97 (9), 2532-2540, 2009 | 47 | 2009 |
| Continuum electrostatic model for the binding of cytochrome c 2 to the photosynthetic reaction center from Rhodobacter sphaeroides O Miyashita, JN Onuchic, MY Okamura Biochemistry 42 (40), 11651-11660, 2003 | 46 | 2003 |
| NMMD: Efficient cryo-EM flexible fitting based on simultaneous Normal Mode and Molecular Dynamics atomic displacements R Vuillemot, O Miyashita, F Tama, I Rouiller, S Jonic Journal of Molecular Biology 434 (7), 167483, 2022 | 40 | 2022 |
Florence TamaProfessor of Physics & ITbM Nagoya University, RIKEN Center for Computational SciencesVerified email at nagoya-u.jp
