Lisa Zeigler Allen
Lisa Zeigler Allen
J. Craig Venter Institute, Scripps Institution of Oceanography
Verifisert e-postadresse på jcvi.org
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Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica
DW Udwary, L Zeigler, RN Asolkar, V Singan, A Lapidus, W Fenical, ...
Proceedings of the National Academy of Sciences 104 (25), 10376-10381, 2007
5402007
Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora
PR Jensen, PG Williams, DC Oh, L Zeigler, W Fenical
Applied and environmental microbiology 73 (4), 1146-1152, 2007
3332007
Genomic and functional adaptation in surface ocean planktonic prokaryotes
S Yooseph, KH Nealson, DB Rusch, JP McCrow, CL Dupont, M Kim, ...
Nature 468 (7320), 60-66, 2010
2542010
Functional tradeoffs underpin salinity-driven divergence in microbial community composition
CL Dupont, J Larsson, S Yooseph, K Ininbergs, J Goll, ...
PloS one 9 (2), e89549, 2014
1282014
Single virus genomics: a new tool for virus discovery
LZ Allen, T Ishoey, MA Novotny, JS McLean, RS Lasken, SJ Williamson
PloS one 6 (3), e17722, 2011
1222011
Metagenomic exploration of viruses throughout the Indian Ocean
SJ Williamson, LZ Allen, HA Lorenzi, DW Fadrosh, D Brami, ...
PloS one 7 (10), e42047, 2012
972012
A metagenomic framework for the study of airborne microbial communities
S Yooseph, C Andrews-Pfannkoch, A Tenney, J McQuaid, S Williamson, ...
PloS one 8 (12), e81862, 2013
912013
Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic
LZ Allen, EE Allen, JH Badger, JP McCrow, IT Paulsen, LDH Elbourne, ...
The ISME journal 6 (7), 1403-1414, 2012
912012
Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem
MW Smith, L Zeigler Allen, AE Allen, L Herfort, HM Simon
Frontiers in microbiology 4, 120, 2013
872013
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
812019
Going deeper: metagenome of a hadopelagic microbial community
EA Eloe, DW Fadrosh, M Novotny, LZ Allen, M Kim, MJ Lombardo, ...
PloS one 6 (5), e20388, 2011
782011
Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform
JS McLean, MJ Lombardo, MG Ziegler, M Novotny, J Yee-Greenbaum, ...
Genome research 23 (5), 867-877, 2013
622013
Identifying low pH active and lactate-utilizing taxa within oral microbiome communities from healthy children using stable isotope probing techniques
JS McLean, SJ Fansler, PD Majors, K McAteer, LZ Allen, ME Shirtliff, ...
PloS one 7 (3), e32219, 2012
512012
Metagenomic investigation of microbes and viruses in patients with jaw osteonecrosis associated with bisphosphonate therapy
PP Sedghizadeh, S Yooseph, DW Fadrosh, L Zeigler-Allen, ...
Oral surgery, oral medicine, oral pathology and oral radiology 114 (6), 764-770, 2012
412012
Diffuse flow environments within basalt-and sediment-based hydrothermal vent ecosystems harbor specialized microbial communities
BJ Campbell, SW Polson, L Zeigler Allen, SJ Williamson, CK Lee, ...
Frontiers in microbiology 4, 182, 2013
402013
The Baltic Sea virome: diversity and transcriptional activity of DNA and RNA viruses
LZ Allen, JP McCrow, K Ininbergs, CL Dupont, JH Badger, JM Hoffman, ...
MSystems 2 (1), 2017
252017
Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly
T Llorens–Marès, Z Liu, LZ Allen, DB Rusch, MT Craig, CL Dupont, ...
The ISME journal 11 (1), 201-211, 2017
232017
Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses
M Tangherlini, A Dell’Anno, LZ Allen, G Riccioni, C Corinaldesi
Scientific reports 6, 28428, 2016
192016
Diversity and genome dynamics of marine cyanophages using metagenomic analyses
Y Ma, LZ Allen, B Palenik
Environmental Microbiology Reports 6 (6), 583-594, 2014
162014
Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection
BC Kolody, JP McCrow, LZ Allen, FO Aylward, KM Fontanez, A Moustafa, ...
The ISME journal 13 (11), 2817-2833, 2019
132019
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Artikler 1–20