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Guohua Jin
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Maximum likelihood of phylogenetic networks
G Jin, L Nakhleh, S Snir, T Tuller
Bioinformatics 22 (21), 2604-2611, 2006
1452006
High Performance Fortran compilation techniques for parallelizing scientific codes
V Adve, G Jin, J Mellor-Crummey, Q Yi
SC'98: Proceedings of the 1998 ACM/IEEE Conference on Supercomputing, 11-11, 1998
1121998
A new vision for Coarray Fortran
J Mellor-Crummey, L Adhianto, WN Scherer III, G Jin
Proceedings of the Third Conference on Partitioned Global Address Space …, 2009
1042009
Inferring phylogenetic networks by the maximum parsimony criterion: a case study
G Jin, L Nakhleh, S Snir, T Tuller
Molecular Biology and Evolution 24 (1), 324-337, 2007
1012007
Reconstructing phylogenetic networks using maximum parsimony
L Nakhleh, G Jin, F Zhao, J Mellor-Crummey
2005 IEEE Computational Systems Bioinformatics Conference (CSB'05), 93-102, 2005
922005
SFCGen: A framework for efficient generation of multi-dimensional space-filling curves by recursion
G Jin, J Mellor-Crummey
ACM Transactions on Mathematical Software (TOMS) 31 (1), 120-148, 2005
782005
Efficient parsimony-based methods for phylogenetic network reconstruction
G Jin, L Nakhleh, S Snir, T Tuller
Bioinformatics 23 (2), e123-e128, 2007
712007
Increasing temporal locality with skewing and recursive blocking
G Jin, J Mellor-Crummey, R Fowler
Proceedings of the 2001 ACM/IEEE Conference on Supercomputing, 43-43, 2001
562001
Advanced optimization strategies in the Rice dHPF compiler
J Mellor‐Crummey, V Adve, B Broom, D Chavarría‐Miranda, R Fowler, ...
Concurrency and Computation: Practice and Experience 14 (8‐9), 741-767, 2002
472002
Implementation and performance evaluation of the hpc challenge benchmarks in coarray fortran 2.0
G Jin, J Mellor-Crummey, L Adhianto, WN Scherer III, C Yang
2011 IEEE International Parallel & Distributed Processing Symposium, 1089-1100, 2011
422011
Improving performance with integrated program transformations
G Jin, J Mellor-Crummey, A Qasem
382004
Parsimony score of phylogenetic networks: hardness results and a linear-time heuristic
G Jin, L Nakhleh, S Snir, T Tuller
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (3), 495-505, 2008
322008
Using space-filling curves for computation reordering
G Jin, J Mellor-Crummey
Proceedings of the Los Alamos Computer Science Institute Sixth Annual Symposium, 2005
262005
Bootstrap-based support of HGT inferred by maximum parsimony
HJ Park, G Jin, L Nakhleh
BMC Evolutionary Biology 10 (1), 1-11, 2010
252010
Hiding latency in coarray fortran 2.0
WN Scherer III, L Adhianto, G Jin, J Mellor-Crummey, C Yang
Proceedings of the Fourth Conference on Partitioned Global Address Space …, 2010
172010
A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: Theoretical bounds and empirical performance
G Jin, L Nakhleh, S Snir, T Tuller
Bioinformatics Research and Applications: Third International Symposium …, 2007
162007
HPFBench: a high performance Fortran benchmark suite
YC Hu, G Jin, SL Johnsson, D Kehagias, N Shalaby
ACM Transactions on Mathematical Software (TOMS) 26 (1), 99-149, 2000
152000
Managing locality in grand challenge applications: a case study of the gyrokinetic toroidal code
G Marin, G Jin, J Mellor-Crummey
Journal of Physics: Conference Series 125 (1), 012087, 2008
142008
Experiences tuning SMG98: a semicoarsening multigrid benchmark based on the hypre library
G Jin, J Mellor-Crummey
Proceedings of the 16th international conference on Supercomputing, 305-314, 2002
142002
Integrating sequence and topology for efficient and accurate detection of horizontal gene transfer
C Than, G Jin, L Nakhleh
Comparative Genomics: International Workshop, RECOMB-CG 2008, Paris, France …, 2008
132008
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Articles 1–20