| Improved scoring of functional groups from gene expression data by decorrelating GO graph structure A Alexa, J Rahnenführer, T Lengauer Bioinformatics 22 (13), 1600-1607, 2006 | 1506 | 2006 |
| topGO: enrichment analysis for gene ontology A Alexa, J Rahnenfuhrer R package version 2 (0), 2010, 2010 | 968 | 2010 |
| A new measure for functional similarity of gene products based on Gene Ontology A Schlicker, FS Domingues, J Rahnenführer, T Lengauer BMC bioinformatics 7 (1), 1-16, 2006 | 705 | 2006 |
| Predicting drug susceptibility of non–small cell lung cancers based on genetic lesions ML Sos, K Michel, T Zander, J Weiss, P Frommolt, M Peifer, D Li, R Ullrich, ... The Journal of clinical investigation 119 (6), 1727-1740, 2009 | 308 | 2009 |
| Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes SE Wuest, K Vijverberg, A Schmidt, M Weiss, J Gheyselinck, M Lohr, ... Current biology 20 (6), 506-512, 2010 | 289 | 2010 |
| YLoc—an interpretable web server for predicting subcellular localization S Briesemeister, J Rahnenfï¿ ½hrer, O Kohlbacher Nucleic acids research 38 (suppl_2), W497-W502, 2010 | 245 | 2010 |
| Biomarker discovery in non–small cell lung cancer: integrating gene expression profiling, meta-analysis, and tissue microarray validation J Botling, K Edlund, M Lohr, B Hellwig, L Holmberg, M Lambe, A Berglund, ... Clinical cancer research 19 (1), 194-204, 2013 | 221 | 2013 |
| Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach AK Krug, R Kolde, JA Gaspar, E Rempel, NV Balmer, K Meganathan, ... Archives of toxicology 87 (1), 123-143, 2013 | 196 | 2013 |
| A comprehensive analysis of human gene expression profiles identifies stromal immunoglobulin κ C as a compatible prognostic marker in human solid tumors M Schmidt, B Hellwig, S Hammad, A Othman, M Lohr, Z Chen, D Boehm, ... Clinical Cancer Research 18 (9), 2695-2703, 2012 | 193 | 2012 |
| topGO: Enrichment analysis for Gene Ontology. R package version 2.28. 0 A Alexa, J Rahnenfuhrer BioConductor. Published online, 2016 | 178 | 2016 |
| Role of thioredoxin reductase 1 and thioredoxin interacting protein in prognosis of breast cancer C Cadenas, D Franckenstein, M Schmidt, M Gehrmann, M Hermes, ... Breast cancer research 12 (3), 1-15, 2010 | 175 | 2010 |
| Calculating the statistical significance of changes in pathway activity from gene expression data. J Rahnenführer, FS Domingues, J Maydt, T Lengauer Statistical Applications in Genetics & Molecular Biology 3 (1), 2004 | 164 | 2004 |
| Going from where to why—interpretable prediction of protein subcellular localization S Briesemeister, J Rahnenführer, O Kohlbacher Bioinformatics 26 (9), 1232-1238, 2010 | 162 | 2010 |
| Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering D Bozinov, J Rahnenführer Bioinformatics 18 (5), 747-756, 2002 | 156 | 2002 |
| Learning multiple evolutionary pathways from cross-sectional data N Beerenwinkel, J Rahnenführer, M Däumer, D Hoffmann, R Kaiser, ... Journal of computational biology 12 (6), 584-598, 2005 | 152 | 2005 |
| Loss of circadian clock gene expression is associated with tumor progression in breast cancer C Cadenas, L van de Sandt, K Edlund, M Lohr, B Hellwig, R Marchan, ... Cell Cycle 13 (20), 3282-3291, 2014 | 148 | 2014 |
| Gene set enrichment analysis with topGO A Alexa, J Rahnenführer Bioconductor Improv 27, 1-26, 2009 | 148 | 2009 |
| ERBB2 and TOP2A in breast cancer: a comprehensive analysis of gene amplification, RNA levels, and protein expression and their influence on prognosis and prediction JC Brase, M Schmidt, T Fischbach, H Sültmann, H Bojar, H Koelbl, ... Clinical Cancer Research 16 (8), 2391-2401, 2010 | 147 | 2010 |
| Computational methods for the design of effective therapies against drug resistant HIV strains N Beerenwinkel, T Sing, T Lengauer, J Rahnenführer, K Roomp, ... Bioinformatics 21 (21), 3943-3950, 2005 | 126 | 2005 |
| Toxicogenomics directory of chemically exposed human hepatocytes M Grinberg, RM Stöber, K Edlund, E Rempel, P Godoy, R Reif, A Widera, ... Archives of toxicology 88 (12), 2261-2287, 2014 | 116 | 2014 |
