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Abdul Salam Jarrah
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A systems biology view of cancer
R Laubenbacher, V Hower, A Jarrah, SV Torti, V Shulaev, P Mendes, ...
Biochimica et Biophysica Acta (BBA)-Reviews on Cancer 1796 (2), 129-139, 2009
1242009
Systems modeling of molecular mechanisms controlling cytokine-driven CD4+ T cell differentiation and phenotype plasticity
A Carbo, R Hontecillas, B Kronsteiner, M Viladomiu, M Pedragosa, P Lu, ...
PLoS computational biology 9 (4), e1003027, 2013
1202013
A mathematical framework for agent based models of complex biological networks
F Hinkelmann, D Murrugarra, AS Jarrah, R Laubenbacher
Bulletin of mathematical biology 73 (7), 1583-1602, 2011
1172011
Gene regulatory network modeling of macrophage differentiation corroborates the continuum hypothesis of polarization states
A Palma, AS Jarrah, P Tieri, G Cesareni, F Castiglione
Frontiers in physiology 9, 417083, 2018
1152018
Reverse-engineering of polynomial dynamical systems
AS Jarrah, R Laubenbacher, B Stigler, M Stillman
Advances in Applied Mathematics 39 (4), 477-489, 2007
1142007
Nested canalyzing, unate cascade, and polynomial functions
AS Jarrah, B Raposa, R Laubenbacher
Physica D: Nonlinear Phenomena 233 (2), 167-174, 2007
1122007
Polynomial algebra of discrete models in systems biology
A Veliz-Cuba, AS Jarrah, R Laubenbacher
Bioinformatics 26 (13), 1637-1643, 2010
1082010
The dynamics of conjunctive and disjunctive Boolean network models
AS Jarrah, R Laubenbacher, A Veliz-Cuba
Bulletin of mathematical biology 72, 1425-1447, 2010
802010
Simulating epstein-barr virus infection with c-immsim
F Castiglione, K Duca, A Jarrah, R Laubenbacher, D Hochberg, ...
Bioinformatics 23 (11), 1371-1377, 2007
752007
The effect of negative feedback loops on the dynamics of Boolean networks
E Sontag, A Veliz-Cuba, R Laubenbacher, AS Jarrah
Biophysical Journal 95 (2), 518-526, 2008
742008
Monomial dynamical systems over finite fields
O Colón-Reyes, A Jarrah, R Laubenbacher, B Sturmfels
arXiv preprint math/0605439, 2006
602006
A mathematical formalism for agent-based modeling
R Laubenbacher, AS Jarrah, H Mortveit, SS Ravi
arXiv preprint arXiv:0801.0249, 2007
512007
A virtual look at Epstein–Barr virus infection: simulation mechanism
M Shapiro, KA Duca, K Lee, E Delgado-Eckert, J Hawkins, AS Jarrah, ...
Journal of theoretical biology 252 (4), 633-648, 2008
462008
A Gröbner fan method for biochemical network modeling
ES Dimitrova, AS Jarrah, R Laubenbacher, B Stigler
Proceedings of the 2007 international symposium on Symbolic and algebraic …, 2007
442007
A new approach to computing hedonic equilibria and investigating the properties of locational sorting models
NV Kuminoff, AS Jarrah
Journal of Urban Economics 67 (3), 322-335, 2010
412010
A virtual look at Epstein–Barr virus infection: biological interpretations
KA Duca, M Shapiro, E Delgado-Eckert, V Hadinoto, AS Jarrah, ...
PLoS pathogens 3 (10), e137, 2007
402007
Parameter estimation for Boolean models of biological networks
E Dimitrova, LD García-Puente, F Hinkelmann, AS Jarrah, ...
Theoretical Computer Science 412 (26), 2816-2826, 2011
372011
The Sibirsky component of the center variety of polynomial differential systems
AS Jarrah, R Laubenbacher, V Romanovski
Journal of Symbolic Computation 35 (5), 577-589, 2003
342003
An algebra-based method for inferring gene regulatory networks
P Vera-Licona, A Jarrah, LD Garcia-Puente, J McGee, R Laubenbacher
BMC systems biology 8, 1-16, 2014
312014
Agent-based modeling, Mathematical formalism for
R Laubenbacher, AS Jarrah, HS Mortveit, SS Ravi
Complex Social and Behavioral Systems: Game Theory and Agent-Based Models …, 2020
232020
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