| A single-cell transcriptome atlas of the aging Drosophila brain K Davie, J Janssens, D Koldere, M De Waegeneer, U Pech, Ł Kreft, ... Cell 174 (4), 982-998. e20, 2018 | 479 | 2018 |
| A scalable SCENIC workflow for single-cell gene regulatory network analysis B Van de Sande, C Flerin, K Davie, M De Waegeneer, G Hulselmans, ... Nature Protocols 15 (7), 2247-2276, 2020 | 307 | 2020 |
| cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data C Bravo González-Blas, L Minnoye, D Papasokrati, S Aibar, ... Nature methods 16 (5), 397-400, 2019 | 223 | 2019 |
| Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling K Davie, J Jacobs, M Atkins, D Potier, V Christiaens, G Halder, S Aerts PLoS genetics 11 (2), e1004994, 2015 | 167 | 2015 |
| The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes J Jacobs, M Atkins, K Davie, H Imrichova, L Romanelli, V Christiaens, ... Nature genetics 50 (7), 1011-1020, 2018 | 121 | 2018 |
| Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly H Li, J Janssens, M De Waegeneer, SS Kolluru, K Davie, V Gardeux, ... Science 375 (6584), eabk2432, 2022 | 111 | 2022 |
| Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ... Nature Cell Biology 22 (8), 986-998, 2020 | 106 | 2020 |
| Xenotransplanted human cortical neurons reveal species-specific development and functional integration into mouse visual circuits D Linaro, B Vermaercke, R Iwata, A Ramaswamy, B Libé-Philippot, ... Neuron 104 (5), 972-986. e6, 2019 | 98 | 2019 |
| Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic A Verfaillie, D Svetlichnyy, H Imrichova, K Davie, M Fiers, ZK Atak, ... Genome research 26 (7), 882-895, 2016 | 68 | 2016 |
| Mapping Gene Regulatory Networks in Drosophila Eye Development by Large-Scale Transcriptome Perturbations and Motif Inference D Potier, K Davie, G Hulselmans, MN Sanchez, L Haagen, D Koldere, ... Cell reports 9 (6), 2290-2303, 2014 | 68 | 2014 |
| Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings I Almudi, J Vizueta, CDR Wyatt, A de Mendoza, F Marlétaz, PN Firbas, ... Nature communications 11 (1), 2631, 2020 | 51 | 2020 |
| Decoding gene regulation in the fly brain J Janssens, S Aibar, II Taskiran, JN Ismail, AE Gomez, G Aughey, ... Nature 601 (7894), 630-636, 2022 | 47 | 2022 |
| Identification of genomic enhancers through spatial integration of single‐cell transcriptomics and epigenomics C Bravo González‐Blas, XJ Quan, R Duran‐Romaña, II Taskiran, ... Molecular systems biology 16 (5), e9438, 2020 | 39 | 2020 |
| Fly Cell Atlas: a single-cell transcriptomic atlas of the adult fruit fly H Li, J Janssens, M De Waegeneer, SS Kolluru, K Davie, V Gardeux, ... BioRxiv, 2021.07. 04.451050, 2021 | 37 | 2021 |
| Actuation enhances patterning in human neural tube organoids AR Abdel Fattah, B Daza, G Rustandi, MÁ Berrocal-Rubio, B Gorissen, ... Nature communications 12 (1), 3192, 2021 | 32 | 2021 |
| Establishment of the mayfly Cloeon dipterum as a new model system to investigate insect evolution I Almudi, CA Martín-Blanco, IM García-Fernandez, A López-Catalina, ... EvoDevo 10 (1), 1-10, 2019 | 17 | 2019 |
| Single-cell gene regulatory network analysis reveals new melanoma cell states and transition trajectories during phenotype switching J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ... BiorXiv, 715995, 2019 | 10 | 2019 |
| Cis-topic modelling of single-cell epigenomes CB González-Blas, L Minnoye, D Papasokrati, S Aibar, G Hulselmans, ... bioRxiv, 370346, 2018 | 9 | 2018 |
| Mitochondria metabolism sets the species-specific tempo of neuronal development R Iwata, P Casimir, E Erkol, L Boubakar, M Planque, IM Gallego López, ... Science 379 (6632), eabn4705, 2023 | 6 | 2023 |
| A single-cell catalogue of regulatory states in the ageing Drosophila brain K Davie, J Janssens, D Koldere, U Pech, S Aibar, M De Waegeneer, ... bioRxiv, 237420, 2017 | 4 | 2017 |
Stein AertsProfessor @ University of Leuven; VIB Group LeaderVerified email at kuleuven.be
