| From expression footprints to causal pathways: contextualizing large signaling networks with CARNIVAL A Liu, P Trairatphisan, E Gjerga, A Didangelos, J Barratt, ... NPJ systems biology and applications 5 (1), 40, 2019 | 107 | 2019 |
| Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses A Dugourd, C Kuppe, M Sciacovelli, E Gjerga, A Gabor, KB Emdal, ... Molecular Systems Biology 17 (1), e9730, 2021 | 106 | 2021 |
| Cancer-associated fibroblasts require proline synthesis by PYCR1 for the deposition of pro-tumorigenic extracellular matrix EJ Kay, K Paterson, C Riera-Domingo, D Sumpton, JHM Däbritz, ... Nature metabolism 4 (6), 693-710, 2022 | 51 | 2022 |
| Converting networks to predictive logic models from perturbation signalling data with CellNOpt E Gjerga, P Trairatphisan, A Gabor, H Koch, C Chevalier, F Ceccarelli, ... Bioinformatics 36 (16), 4523-4524, 2020 | 20 | 2020 |
| PHONEMeS: efficient modeling of signaling networks derived from large-scale mass spectrometry data E Gjerga, A Dugourd, L Tobalina, A Sousa, J Saez-Rodriguez Journal of Proteome Research 20 (4), 2138-2144, 2021 | 18 | 2021 |
| Treatment with ribociclib shows favourable immunomodulatory effects in patients with hormone receptor-positive breast cancer—findings from the RIBECCA trial CA Peuker, S Yaghobramzi, C Grunert, L Keilholz, E Gjerga, S Hennig, ... European Journal of Cancer 162, 45-55, 2022 | 15 | 2022 |
| Elucidating essential kinases of endothelin signalling by logic modelling of phosphoproteomics data A Schäfer, E Gjerga, RWD Welford, I Renz, F Lehembre, PMA Groenen, ... Molecular systems biology 15 (8), e8828, 2019 | 12 | 2019 |
| Metabolic control of tumour extracellular matrix production in cancer-associated fibroblasts EJ Kay, K Paterson, D Sumpton, E Stepanova, C Boldrini, ... BioRxiv, 2020 | 8* | 2020 |
| Systems approach reveals distinct and shared signaling networks of the four PGE2 receptors in T cells AM Lone, P Giansanti, MJ Jørgensen, E Gjerga, A Dugourd, A Scholten, ... Science Signaling 14 (703), eabc8579, 2021 | 6 | 2021 |
| From expression footprints to causal pathways: contextualizing large signaling networks with CARNIVAL. NPJ Syst Biol Appl 5 A Liu, P Trairatphisan, E Gjerga | 5 | 2019 |
| Authentication of primary murine cell lines by a microfluidics-based lab-on-chip system Y Hong, N Singh, S Bamopoulos, E Gjerga, LK Schmalbrock, ... Biomedicines 8 (12), 590, 2020 | 4 | 2020 |
| Adaptive Sampling as tool for Nanopore direct RNA-sequencing ISN Vries, E Gjerga, CLA Gandor, C Dieterich bioRxiv, 2022.10. 14.512223, 2022 | 3 | 2022 |
| Literature and data-driven based inference of signalling interactions using time-course data E Gjerga, P Trairatphisan, A Gabor, J Saez-Rodriguez IFAC-PapersOnLine 52 (26), 52-57, 2019 | 3 | 2019 |
| Logical modelling of cellular networks A Niarakis, D Thieffry | 3 | 2018 |
| Characterizing alternative splicing effects on protein interaction networks with LINDA E Gjerga, IS Naarmann-de Vries, C Dieterich Bioinformatics 39 (Supplement_1), i458-i464, 2023 | 2 | 2023 |
| Magnetique: an interactive web application to explore transcriptome signatures of heart failure T Britto-Borges, A Ludt, E Boileau, E Gjerga, F Marini, C Dieterich Journal of Translational Medicine 20 (1), 513, 2022 | 2 | 2022 |
| A machine learning and directed network optimization approach to uncover TP53 regulatory patterns CP Triantafyllidis, A Barberis, F Hartley, AM Cuervo, E Gjerga, P Charlton, ... Iscience 26 (12), 2023 | 1 | 2023 |
| Modelling and Analysis of Large-Scale Models of Signalling Networks E Gjerga | 1 | 2020 |
| Prostaglandin E2 signaling networks in T cells revealed through a systems approach AM Lone, P Giansanti, MJ Jørgensen, E Gjerga, A Dugourd, A Scholten, ... The FASEB Journal 33 (S1), lb258-lb258, 2019 | 1 | 2019 |
| Transverse Aortic COnstriction Multi-omics Analysis (TACOMA) uncovers pathophysiological cardiac molecular mechanisms E Gjerga, M Dewenter, T Britto-Borges, J Grosso, F Stein, J Eschenbach, ... bioRxiv, 2024.01. 26.577333, 2024 | | 2024 |
Julio Saez RodriguezHeidelberg UniversityVerified email at uni-heidelberg.de
