MultiQC: summarize analysis results for multiple tools and samples in a single report P Ewels, M Magnusson, S Lundin, M Käller Bioinformatics 32 (19), 3047-3048, 2016 | 5237 | 2016 |
The nf-core framework for community-curated bioinformatics pipelines PA Ewels, A Peltzer, S Fillinger, H Patel, J Alneberg, A Wilm, MU Garcia, ... Nature biotechnology 38 (3), 276-278, 2020 | 1106 | 2020 |
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C B Mifsud, F Tavares-Cadete, AN Young, R Sugar, S Schoenfelder, ... Nature genetics 47 (6), 598-606, 2015 | 1008 | 2015 |
Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 800 | 2018 |
Genetic determinants of ulcerative colitis include the ECM1 locus and five loci implicated in Crohn's disease SA Fisher, M Tremelling, CA Anderson, R Gwilliam, S Bumpstead, ... Nature genetics 40 (6), 710-712, 2008 | 545 | 2008 |
HiCUP: pipeline for mapping and processing Hi-C data S Wingett, P Ewels, M Furlan-Magaril, T Nagano, S Schoenfelder, ... F1000Research 4, 2015 | 538 | 2015 |
Global reorganization of the nuclear landscape in senescent cells T Chandra, PA Ewels, S Schoenfelder, M Furlan-Magaril, SW Wingett, ... Cell reports 10 (4), 471-483, 2015 | 330 | 2015 |
Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies S Patalano, A Vlasova, C Wyatt, P Ewels, F Camara, PG Ferreira, ... Proceedings of the National Academy of Sciences 112 (45), 13970-13975, 2015 | 207 | 2015 |
Large scale association analysis of novel genetic loci for coronary artery disease Coronary Artery Disease Consortium Arteriosclerosis, thrombosis, and vascular biology 29 (5), 774-780, 2009 | 191 | 2009 |
Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants M Garcia, S Juhos, M Larsson, PI Olason, M Martin, J Eisfeldt, ... F1000Research 9, 2020 | 128 | 2020 |
Sorting nexin-1 defines an early phase of Salmonella-containing vacuole-remodeling during Salmonella infection MV Bujny, PA Ewels, S Humphrey, N Attar, MA Jepson, PJ Cullen Journal of cell science 121 (12), 2027-2036, 2008 | 113 | 2008 |
A Complete Overhaul of the Electron Energy-Loss Spectroscopy and X-Ray Absorption Spectroscopy Database: eelsdb.eu P Ewels, T Sikora, V Serin, CP Ewels, L Lajaunie Microscopy and Microanalysis, 1-8, 2016 | 111 | 2016 |
Understanding functional miRNA–target interactions in vivo by site-specific genome engineering AR Bassett, G Azzam, L Wheatley, C Tibbit, T Rajakumar, S McGowan, ... Nature communications 5 (1), 4640, 2014 | 101 | 2014 |
High-Throughput Genotyping of Salmonella enterica Serovar Typhi Allowing Geographical Assignment of Haplotypes and Pathotypes within an Urban District of … S Baker, K Holt, E Van de Vosse, P Roumagnac, S Whitehead, E King, ... Journal of clinical microbiology 46 (5), 1741-1746, 2008 | 96 | 2008 |
A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines Y Chen, NM Davidson, YK Wan, H Patel, F Yao, HM Low, C Hendra, ... BioRxiv, 2021.04. 21.440736, 2021 | 59 | 2021 |
Implementing FAIR digital objects in the EOSC-Life workflow collaboratory C Goble, S Soiland-Reyes, F Bacall, S Owen, A Williams, I Eguinoa, ... Zenodo, 2021 | 52 | 2021 |
Building an international consortium for tracking coronavirus health status E Segal, F Zhang, X Lin, G King, O Shalem, S Shilo, WE Allen, ... Nature medicine 26 (8), 1161-1165, 2020 | 39 | 2020 |
Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women K Engström, TK Wojdacz, F Marabita, P Ewels, M Käller, F Vezzi, ... Archives of toxicology 91, 2067-2078, 2017 | 29 | 2017 |
Cluster Flow: A user-friendly bioinformatics workflow tool P Ewels, F Krueger, M Käller, S Andrews F1000Research 5, 2016 | 25 | 2016 |
DIAproteomics: A multifunctional data analysis pipeline for data-independent acquisition proteomics and peptidomics L Bichmann, S Gupta, G Rosenberger, L Kuchenbecker, T Sachsenberg, ... Journal of proteome research 20 (7), 3758-3766, 2021 | 23 | 2021 |