Geir Kjetil Sandve
Geir Kjetil Sandve
Professor, bioinformatics, University of Oslo
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Ten simple rules for reproducible computational research
GK Sandve, A Nekrutenko, J Taylor, E Hovig
PLoS Comput Biol 9 (10), e1003285, 2013
A survey of motif discovery methods in an integrated framework
GK Sandve, F Drabløs
Biology direct 1 (1), 1-16, 2006
In the loop: promoter–enhancer interactions and bioinformatics
A Mora, GK Sandve, OS Gabrielsen, R Eskeland
Briefings in bioinformatics 17 (6), 980-995, 2016
The Genomic HyperBrowser: inferential genomics at the sequence level
GK Sandve, S Gundersen, H Rydbeck, IK Glad, L Holden, M Holden, ...
Genome biology 11 (12), R121, 2010
Improved benchmarks for computational motif discovery
GK Sandve, O Abul, V Walseng, F Drabløs
BMC bioinformatics 8 (1), 193, 2007
Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease
AE Handel, GK Sandve, G Disanto, AJ Berlanga-Taylor, G Gallone, ...
BMC medicine 11 (1), 163, 2013
Assessment of composite motif discovery methods
K Klepper, GK Sandve, O Abul, J Johansen, F Drablos
BMC bioinformatics 9 (1), 123, 2008
Vitamin D receptor binding, chromatin states and association with multiple sclerosis
G Disanto, GK Sandve, AJ Berlanga-Taylor, G Ragnedda, JM Morahan, ...
Human molecular genetics 21 (16), 3575-3586, 2012
Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease
LF Risnes, A Christophersen, S Dahal-Koirala, RS Neumann, GK Sandve, ...
The Journal of clinical investigation 128 (6), 2642-2650, 2018
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization
J Paulsen, GK Sandve, S Gundersen, TG Lien, K Trengereid, E Hovig
Bioinformatics 30 (11), 1620-1622, 2014
The Genomic HyperBrowser: an analysis web server for genome-scale data
GK Sandve, S Gundersen, M Johansen, IK Glad, K Gunathasan, L Holden, ...
Nucleic acids research 41 (W1), W133-W141, 2013
Identifying elemental genomic track types and representing them uniformly
S Gundersen, M Kalaš, O Abul, A Frigessi, E Hovig, GK Sandve
BMC bioinformatics 12 (1), 494, 2011
A map of direct TF–DNA interactions in the human genome
M Gheorghe, GK Sandve, A Khan, J Chèneby, B Ballester, A Mathelier
Nucleic acids research 47 (4), e21-e21, 2019
Uracil accumulation and mutagenesis dominated by cytosine deamination in CpG dinucleotides in mice lacking UNG and SMUG1
L Alsøe, A Sarno, S Carracedo, D Domanska, F Dingler, L Lirussi, ...
Scientific reports 7 (1), 1-14, 2017
Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements
J Paulsen, TG Lien, GK Sandve, L Holden, Ø Borgan, IK Glad, E Hovig
Nucleic acids research 41 (10), 5164-5174, 2013
Increased expression of IRF4 and ETS1 in CD4+ cells from patients with intermittent allergic rhinitis
S Bruhn, F Barrenäs, R Mobini, BA Andersson, S Chavali, BS Egan, ...
Allergy 67 (1), 33-40, 2012
High-throughput single-cell analysis of B cell receptor usage among autoantigen-specific plasma cells in celiac disease
B Roy, RS Neumann, O Snir, R Iversen, GK Sandve, KEA Lundin, ...
The Journal of Immunology 199 (2), 782-791, 2017
c-Myb binding sites in haematopoietic chromatin landscapes
M Bengtsen, K Klepper, S Gundersen, I Cuervo, F Drabløs, E Hovig, ...
PloS one 10 (7), e0133280, 2015
Sequential Monte Carlo multiple testing
GK Sandve, E Ferkingstad, S Nygård
Bioinformatics 27 (23), 3235-3241, 2011
Human somatic cell mutagenesis creates genetically tractable sarcomas
SD Molyneux, PD Waterhouse, D Shelton, YW Shao, CM Watling, ...
Nature genetics 46 (9), 964, 2014
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