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Evguenia Kopylova
Evguenia Kopylova
Host-microbiome data analysis | Managing Director, Clarity Genomics
Verifisert e-postadresse på clarity-genomics.com - Startside
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SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
E Kopylova, L Noé, H Touzet
Bioinformatics 28 (24), 3211-3217, 2012
23152012
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
21852017
Deblur rapidly resolves single-nucleotide community sequence patterns
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ...
MSystems 2 (2), 10.1128/msystems. 00191-16, 2017
12762017
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ...
Nature 579 (7800), 567-574, 2020
7912020
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
Nature communications 11 (1), 2500, 2020
3982020
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ...
Nature communications 10 (1), 5477, 2019
2372019
Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems 2: e00191-16
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ...
1832017
Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Y He, JG Caporaso, XT Jiang, HF Sheng, SM Huse, JR Rideout, ...
Microbiome 3, 1-10, 2015
1832015
Open-source sequence clustering methods improve the state of the art
E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ...
MSystems 1 (1), 10.1128/msystems. 00003-15, 2016
1562016
Origin of microbial biomineralization and magnetotaxis during the Archean
W Lin, GA Paterson, Q Zhu, Y Wang, E Kopylova, Y Li, R Knight, ...
Proceedings of the National Academy of Sciences 114 (9), 2171-2176, 2017
1162017
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0. Nat Commun 11: 2500
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
502020
A comparison of index-based Lempel-Ziv LZ77 factorization algorithms
A Al-Hafeedh, M Crochemore, L Ilie, E Kopylova, WF Smyth, G Tischler, ...
ACM Computing Surveys (CSUR) 45 (1), 1-17, 2012
402012
A standardized, extensible framework for optimizing classification improves marker-gene taxonomic assignments
NA Bokulich, JR Rideout, E Kopylova, E Bolyen, J Patnode, Z Ellett, ...
PeerJ PrePrints 3, e934v2, 2015
342015
The three squares lemma revisited
E Kopylova, WF Smyth
Journal of Discrete Algorithms 11, 3-14, 2012
252012
Reply to Wang and Chen: An ancient origin of magnetotactic bacteria
W Lin, GA Paterson, Q Zhu, Y Wang, E Kopylova, Y Li, R Knight, ...
Proceedings of the National Academy of Sciences 114 (26), E5019-E5020, 2017
92017
Reply to: caution regarding the specificities of pan-cancer microbial structure
GD Sepich-Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, ...
bioRxiv, 2023.02. 10.528049, 2023
82023
B. infantis EVC001 Is Well-Tolerated and Improves Human Milk Oligosaccharide Utilization in Preterm Infants in the Neonatal Intensive Care Unit
S Bajorek, RM Duar, M Corrigan, C Matrone, KA Winn, S Norman, ...
Frontiers in Pediatrics 9, 795970, 2022
72022
Deciphering metatranscriptomic data
E Kopylova, L Noé, C Da Silva, JF Berthelot, A Alberti, JM Aury, H Touzet
RNA Bioinformatics, 279-291, 2015
72015
Sortmerna 2: ribosomal rna classification for taxonomic assignation
E Kopylova, L Noé, P Pericard, M Salson, H Touzet
Workshop on recent computational advances in metagenomics, ECCB 2014, 2014
52014
Multi-omic approach to decipher the impact of skincare products with pre/postbiotics on skin microbiome and metabolome
M Li, J Mao, I Diaz, E Kopylova, AV Melnik, AA Aksenov, CD Tipton, ...
Frontiers in Medicine 10, 1165980, 2023
22023
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Artikler 1–20