Impact of similarity metrics on single-cell RNA-seq data clustering T Kim, IR Chen, Y Lin, AYY Wang, JYH Yang, P Yang Briefings in bioinformatics 20 (6), 2316-2326, 2019 | 125 | 2019 |
PhosR enables processing and functional analysis of phosphoproteomic data HJ Kim, T Kim, NJ Hoffman, D Xiao, DE James, SJ Humphrey, P Yang Cell Reports 34 (8), 108771, 2021 | 59 | 2021 |
Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis TA Geddes, T Kim, L Nan, JG Burchfield, JYH Yang, D Tao, P Yang BMC bioinformatics 20 (19), 1-11, 2019 | 53 | 2019 |
Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells P Yang, A Oldfield, T Kim, A Yang, JYH Yang, JWK Ho Bioinformatics 33 (13), 1916-1920, 2017 | 23 | 2017 |
A hierarchical approach to removal of unwanted variation for large-scale metabolomics data T Kim, O Tang, ST Vernon, KA Kott, YC Koay, J Park, DE James, ... Nature Communications 12 (1), 1-10, 2021 | 21 | 2021 |
scReClassify: post hoc cell type classification of single-cell rNA-seq data T Kim, K Lo, TA Geddes, HJ Kim, JYH Yang, P Yang BMC genomics 20 (9), 1-10, 2019 | 17 | 2019 |
Metabolic Signatures in Coronary Artery Disease: Results from the BioHEART-CT Study ST Vernon, O Tang, T Kim, AS Chan, KA Kott, J Park, T Hansen, YC Koay, ... Cells 10 (5), 980, 2021 | 14 | 2021 |
Protocol for the processing and downstream analysis of phosphoproteomic data with PhosR HJ Kim, T Kim, D Xiao, P Yang STAR protocols 2 (2), 100585, 2021 | 9 | 2021 |
hRUV: Hierarchical approach to removal of unwanted variation for large-scale metabolomics data T Kim, O Tang, S Vernon, K Kott, YC Koay, J Park, D James, T Speed, ... | 5 | 2021 |
QCMAP: An Interactive Web‐Tool for Performance Diagnosis and Prediction of LC‐MS Systems T Kim, IR Chen, BL Parker, SJ Humphrey, B Crossett, SJ Cordwell, ... Proteomics 19 (13), 1900068, 2019 | 5 | 2019 |
Integrative analysis reveals histone demethylase LSD1 promotes RNA polymerase II pausing HJ Kim, P Li, T Kim, AJ Oldfield, X Zheng, P Yang Iscience 25 (10), 2022 | 3 | 2022 |
001 The Utility of the P2X7 Receptor as a Diagnostic and Therapeutic Target in Atherosclerosis and Efficacy of a Novel P2X7 Receptor Antagonist T Hansen, K Bubb, H McGuire, T Kim, S Vernon, K Kott, J Yang, ... Heart, Lung and Circulation 29, S37, 2020 | 1 | 2020 |
PAD2: interactive exploration of transcription factor genomic colocalization using ChIP-seq data T Kim, HJ Kim, AJ Oldfield, P Yang STAR protocols 4 (2), 102203, 2023 | | 2023 |
Circulating immune cell profiles detected by mass cytometry differ significantly between patients with predominantly calcified and predominantly non-calcified coronary … KA Kott, T Hansen, M De Dreu, ST Vernon, T Kim, JJ Yang, ... European Heart Journal 41 (Supplement_2), ehaa946. 1296, 2020 | | 2020 |
Integrative Analysis Reveals Histone Demethylase LSD1/KDM1A Associates with RNA Polymerase II Pausing HJ Kim, T Kim, AJ Oldfield, P Yang bioRxiv, 2020 | | 2020 |
302 Circulating Immune Cell Profiles Detected by Mass Cytometry Differ Significantly between Patients with Predominantly Calcified and Predominantly Non-Calcified Coronary … K Kott, S Vernon, T Hansen, M de Dreu, T Kim, J Yang, BF De St Groth, ... Heart, Lung and Circulation 29, S169, 2020 | | 2020 |