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Ryan Leo Elworth
Ryan Leo Elworth
Postdoctoral Scientist, Rice University
Verified email at rice.edu
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Cited by
Cited by
Year
Comprehensive multi-omics analysis reveals mitochondrial stress as a central biological hub for spaceflight impact
WA da Silveira, H Fazelinia, SB Rosenthal, EC Laiakis, MS Kim, ...
Cell 183 (5), 1185-1201. e20, 2020
2032020
Current progress and open challenges for applying deep learning across the biosciences
N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ...
Nature Communications 13 (1), 1728, 2022
1592022
Advances in computational methods for phylogenetic networks in the presence of hybridization
RAL Elworth, HA Ogilvie, J Zhu, L Nakhleh
Bioinformatics and phylogenetics: seminal contributions of Bernard Moret …, 2019
902019
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission
N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ...
Genome research 31 (4), 635-644, 2021
55*2021
The essential role of hypermutation in rapid adaptation to antibiotic stress
HH Mehta, AG Prater, K Beabout, RAL Elworth, M Karavis, HS Gibbons, ...
Antimicrobial agents and chemotherapy 63 (7), 10.1128/aac. 00744-19, 2019
472019
To petabytes and beyond: recent advances in probabilistic and signal processing algorithms and their application to metagenomics
RAL Elworth, Q Wang, PK Kota, CJ Barberan, B Coleman, A Balaji, ...
Nucleic acids research 48 (10), 5217-5234, 2020
362020
SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning
A Balaji, B Kille, AD Kappell, GD Godbold, M Diep, RAL Elworth, Z Qian, ...
Genome biology 23 (1), 133, 2022
282022
Pathogenic Nocardia cyriacigeorgica and Nocardia nova evolve to resist trimethoprim-sulfamethoxazole by both expected and unexpected pathways
H Mehta, J Weng, A Prater, RAL Elworth, X Han, Y Shamoo
Antimicrobial agents and chemotherapy 62 (7), 10.1128/aac. 00364-18, 2018
272018
Fast processing and querying of 170tb of genomics data via a repeated and merged bloom filter (rambo)
G Gupta, M Yan, B Coleman, B Kille, RAL Elworth, T Medini, T Treangen, ...
Proceedings of the 2021 International Conference on Management of Data, 2226 …, 2021
23*2021
DGEN: A Test Statistic for Detection of General Introgression Scenarios
RAL Elworth, C Allen, T Benedict, P Dulworth, L Nakhleh
18th International Workshop on Algorithms in Bioinformatics (WABI 2018) 113 …, 2018
172018
PlasmidHawk improves lab of origin prediction of engineered plasmids using sequence alignment
Q Wang, B Kille, TR Liu, RAL Elworth, TJ Treangen
Nature communications 12 (1), 1167, 2021
15*2021
Synthetic DNA and biosecurity: Nuances of predicting pathogenicity and the impetus for novel computational approaches for screening oligonucleotides
RAL Elworth, C Diaz, J Yang, P de Figueiredo, K Ternus, T Treangen
PLoS Pathogens 16 (8), e1008649, 2020
112020
De novo identification of microbial contaminants in low microbial biomass microbiomes with Squeegee
Y Liu, RAL Elworth, MD Jochum, KM Aagaard, TJ Treangen
Nature Communications 13 (1), 6799, 2022
102022
SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest
D Albin, D Nasko, RAL Elworth, J Lu, A Balaji, C Diaz, N Shah, J Selengut, ...
2019 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2019
102019
One-pass diversified sampling with application to terabyte-scale genomic sequence streams
B Coleman, B Geordie, L Chou, RAL Elworth, T Treangen, A Shrivastava
International Conference on Machine Learning, 4202-4218, 2022
82022
Targeted metagenomic sequencing for detection of vertebrate viruses in wastewater for public health surveillance
C McCall, RA Leo Elworth, KM Wylie, TN Wylie, K Dyson, R Doughty, ...
ACS ES&T Water 3 (9), 2955-2965, 2023
72023
Faster pan-genome construction for efficient differentiation of naturally occurring and engineered plasmids with plaster
Q Wang, RA Elworth, TR Liu, TJ Treangen
19th International Workshop on Algorithms in Bioinformatics (WABI 2019), 2019
62019
ALPHA: A toolkit for automated local phylogenomic analyses
RAL Elworth, C Allen, T Benedict, P Dulworth, L Nakhleh
Bioinformatics 34 (16), 2848-2850, 2018
62018
KOMB: K-core based de novo characterization of copy number variation in microbiomes
A Balaji, N Sapoval, C Seto, RAL Elworth, Y Fu, MG Nute, T Savidge, ...
Computational and Structural Biotechnology Journal 20, 3208-3222, 2022
52022
Diversified RACE sampling on data streams applied to metagenomic sequence analysis
B Coleman, B Geordie, L Chou, RAL Elworth, TJ Treangen, A Shrivastava
bioRxiv, 852889, 2019
32019
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