Joshua Z. Levin

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Moran YassourThe Hebrew University of JerusalemVerifisert e-postadresse på mail.huji.ac.il
Nir FriedmanProfessor of Computer Science and Medicine, Hebrew UniversityVerifisert e-postadresse på mail.huji.ac.il
Sean SimmonsComputational biologist, Broad InstituteVerifisert e-postadresse på broadinstitute.org
Brian HaasBroad InstituteVerifisert e-postadresse på broadinstitute.org
Ido AmitProfessor of Immunology, Weizmann Institute of ScienceVerifisert e-postadresse på weizmann.ac.il
Amanda J KedaigleBroad InstituteVerifisert e-postadresse på broadinstitute.org
John RinnProfessor University of Colorado Boulder BioFrontiersVerifisert e-postadresse på colorado.edu
N RhindBiochemistry, UMass Med SchoolVerifisert e-postadresse på umassmed.edu
Manfred GrabherrAssociate Professor, Inland Norway University of Applied SciencesVerifisert e-postadresse på inn.no
Federica Di PalmaUniversity of East AngliaVerifisert e-postadresse på scienceisglobal.com
Manuel GarberUniversity of Massachusetts Medical SchoolVerifisert e-postadresse på umassmed.edu
Andrey SivachenkoHead of Bioinformatics, Cystic Fibrosis Foundation Therapeutics LaboratoryVerifisert e-postadresse på cff.org
David S. DeLucaHannover Medical SchoolVerifisert e-postadresse på mh-hannover.de
Zehua ChenMorphosysVerifisert e-postadresse på morphosys.com
Alex K. ShalekMIT, Ragon Institute, Broad InstituteVerifisert e-postadresse på mit.edu
Kwanho KimBroad Institute of MIT and HarvardVerifisert e-postadresse på broadinstitute.org
Bruna PaulsenHarvard UniversityVerifisert e-postadresse på harvard.edu
Rahul SatijaCore Faculty Member, New York Genome Center. Department of Biology, NYUVerifisert e-postadresse på nygenome.org
Mitchell GuttmanProfessor of Biology, California Institute of TechnologyVerifisert e-postadresse på lncrna.caltech.edu
Aaron M. BerlinVP Oncology Software, InvitaeVerifisert e-postadresse på invitae.com

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Joshua Z. Levin

Broad Institute of MIT & Harvard

Verifisert e-postadresse på broadinstitute.org - Startside

Genomics RNA-Seq Single Cell Neuroscience


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Full-length transcriptome assembly from RNA-Seq data without a reference genome MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ... Nature biotechnology 29 (7), 644-652, 2011	20078*	2011
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs M Guttman, M Garber, JZ Levin, J Donaghey, J Robinson, X Adiconis, ... Nature biotechnology 28 (5), 503-510, 2010	1492	2010
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells AK Shalek, R Satija, X Adiconis, RS Gertner, JT Gaublomme, ... Nature 498 (7453), 236-240, 2013	1386	2013
Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics K Shekhar, SW Lapan, IE Whitney, NM Tran, EZ Macosko, M Kowalczyk, ... Cell 166 (5), 1308-1323. e30, 2016	1170	2016
RNA-SeQC: RNA-seq metrics for quality control and process optimization DS DeLuca, JZ Levin, A Sivachenko, T Fennell, MD Nazaire, C Williams, ... Bioinformatics 28 (11), 1530-1532, 2012	952	2012
Comprehensive comparative analysis of strand-specific RNA sequencing methods JZ Levin, M Yassour, X Adiconis, C Nusbaum, DA Thompson, N Friedman, ... Nature methods 7 (9), 709-715, 2010	927	2010
Individual brain organoids reproducibly form cell diversity of the human cerebral cortex S Velasco, AJ Kedaigle, SK Simmons, A Nash, M Rocha, G Quadrato, ... Nature 570 (7762), 523-527, 2019	868	2019
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis A Pauli, E Valen, MF Lin, M Garber, NL Vastenhouw, JZ Levin, L Fan, ... Genome Research 22 (3), 577-591, 2012	849	2012
The African coelacanth genome provides insights into tetrapod evolution CT Amemiya, J Alföldi, AP Lee, S Fan, H Philippe, I MacCallum, I Braasch, ... Nature 496 (7445), 311-316, 2013	763	2013
Systematic comparison of single-cell and single-nucleus RNA-sequencing methods J Ding, X Adiconis, SK Simmons, MS Kowalczyk, CC Hession, ... Nature biotechnology 38 (6), 737-746, 2020	719	2020
Peptidomic discovery of short open reading frame–encoded peptides in human cells SA Slavoff, AJ Mitchell, AG Schwaid, MN Cabili, J Ma, JZ Levin, ... Nature chemical biology 9 (1), 59-64, 2013	697	2013
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells M Rabani, JZ Levin, L Fan, X Adiconis, R Raychowdhury, M Garber, ... Nature biotechnology 29 (5), 436-442, 2011	660	2011
The SHOOT MERISTEMLESS gene is required for maintenance of undifferentiated cells in Arabidopsis shoot and floral meristems and acts at a different regulatory level than the … K Endrizzi, B Moussian, A Haecker, JZ Levin, T Laux The Plant Journal 10 (6), 967-979, 1996	579	1996
Single-cell transcriptomic profiling of the aging mouse brain M Ximerakis, SL Lipnick, BT Innes, SK Simmons, X Adiconis, D Dionne, ... Nature neuroscience 22 (10), 1696-1708, 2019	577	2019
Comparative functional genomics of the fission yeasts N Rhind, Z Chen, M Yassour, DA Thompson, BJ Haas, N Habib, ... Science 332 (6032), 930-936, 2011	548	2011
Comparative analysis of RNA sequencing methods for degraded or low-input samples X Adiconis, D Borges-Rivera, R Satija, DS DeLuca, MA Busby, AM Berlin, ... Nature methods 10 (7), 623-629, 2013	529	2013
The CLAVATA and SHOOT MERISTEMLESS loci competitively regulate meristem activity in Arabidopsis SE Clark, SE Jacobsen, JZ Levin, EM Meyerowitz Development 122 (5), 1567-1575, 1996	527	1996
Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes NM Tran, K Shekhar, IE Whitney, A Jacobi, I Benhar, G Hong, W Yan, ... Neuron 104 (6), 1039-1055. e12, 2019	501	2019
Insertional mutagenesis of genes required for seed development in Arabidopsis thaliana J McElver, I Tzafrir, G Aux, R Rogers, C Ashby, K Smith, C Thomas, ... Genetics 159 (4), 1751-1763, 2001	403	2001
Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects E Mereu, A Lafzi, C Moutinho, C Ziegenhain, DJ MacCarthy, A Alvarez, ... BioRxiv, 630087, 2019	398	2019

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