Cross species analysis of microarray expression data Y Lu, P Huggins, Z Bar-Joseph Bioinformatics 25 (12), 1476-1483, 2009 | 127 | 2009 |

The hyperdeterminant and triangulations of the 4-cube P Huggins, B Sturmfels, J Yu, D Yuster Mathematics of Computation 77 (263), 1653-1679, 2008 | 84 | 2008 |

DECOD: fast and accurate discriminative DNA motif finding P Huggins, S Zhong, I Shiff, R Beckerman, O Laptenko, C Prives, ... Bioinformatics 27 (17), 2361-2367, 2011 | 65 | 2011 |

Parametric alignment of Drosophila genomes CN Dewey, PM Huggins, K Woods, B Sturmfels, L Pachter PLoS Computational Biology 2 (6), e73, 2006 | 57 | 2006 |

Short rational functions for toric algebra and applications JA De Loera, D Haws, R Hemmecke, P Huggins, B Sturmfels, R Yoshida Journal of Symbolic Computation 38 (2), 959-973, 2004 | 55 | 2004 |

On the optimality of the neighbor-joining algorithm K Eickmeyer, P Huggins, L Pachter, R Yoshida Algorithms for Molecular Biology 3, 1-11, 2008 | 53 | 2008 |

Detection of radioactive sources in urban scenes using Bayesian Aggregation of data from mobile spectrometers P Tandon, P Huggins, R Maclachlan, A Dubrawski, K Nelson, S Labov Information Systems 57, 195-206, 2016 | 48 | 2016 |

kdetrees: non-parametric estimation of phylogenetic tree distributions G Weyenberg, PM Huggins, CL Schardl, DK Howe, R Yoshida Bioinformatics 30 (16), 2280-2287, 2014 | 47 | 2014 |

Toward the human genotope P Huggins, L Pachter, B Sturmfels Bulletin of mathematical biology 69, 2723-2735, 2007 | 30 | 2007 |

A computational study of integer programming algorithms based on Barvinok's rational functions JA De Loera, D Haws, R Hemmecke, P Huggins, R Yoshida Discrete Optimization 2 (2), 135-144, 2005 | 20 | 2005 |

Three kinds of integer programming algorithms based on barvinok’s rational functions JA De Loera, D Haws, R Hemmecke, P Huggins, R Yoshida Integer Programming and Combinatorial Optimization: 10th International IPCO …, 2004 | 20 | 2004 |

*iB4e*: A Software Framework for Parametrizing Specialized LP ProblemsP Huggins Mathematical Software-ICMS 2006: Second International Congress on …, 2006 | 18 | 2006 |

First steps toward the geometry of cophylogeny P Huggins, M Owen, R Yoshida Harmony of Gröbner bases and the modern industrial society, 99-116, 2012 | 14 | 2012 |

Bayes estimators for phylogenetic reconstruction PM Huggins, W Li, D Haws, T Friedrich, J Liu, R Yoshida Systematic biology 60 (4), 528-540, 2011 | 13 | 2011 |

A support vector machine based test for incongruence between sets of trees in tree space DC Haws, P Huggins, EM O’Neill, DW Weisrock, R Yoshida BMC bioinformatics 13, 1-14, 2012 | 12 | 2012 |

Evaluation of coded aperture radiation detectors using a Bayesian approach K Miller, P Huggins, S Labov, K Nelson, A Dubrawski Nuclear Instruments and Methods in Physics Research Section A: Accelerators …, 2016 | 11 | 2016 |

A User’s Guide for LattE v1. 1, 2003 JA De Loera, D Haws, R Hemmecke, P Huggins, J Tauzer, R Yoshida Software package LattE is available at http://www. math. ucdavis. edu/∼ latte, 1997 | 11 | 1997 |

Reconstruction of composite regulator-target splicing networks from high-throughput transcriptome data P Papasaikas, A Rao, P Huggins, J Valcarcel, AJ Lopez BMC genomics 16 (Suppl 10), S7, 2015 | 10 | 2015 |

Statistical phylogenetic tree analysis using differences of means E Arnaoudova, DC Haws, P Huggins, JW Jaromczyk, N Moore, ... Frontiers in neuroscience 4, 47, 2010 | 10 | 2010 |

Predicting neurological recovery with canonical autocorrelation embeddings M De-Arteaga, J Chen, P Huggins, J Elmer, G Clermont, A Dubrawski PloS one 14 (1), e0210966, 2019 | 8 | 2019 |