Jonas Paulsen
Jonas Paulsen
Associate Professor, University of Oslo, Norway
Verified email at ifi.uio.no - Homepage
Title
Cited by
Cited by
Year
The genome sequence of Atlantic cod reveals a unique immune system
B Star, AJ Nederbragt, S Jentoft, U Grimholt, M Malmstrøm, TF Gregers, ...
Nature 477 (7363), 207-210, 2011
6682011
Chrom3D: three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts
J Paulsen, M Sekelja, AR Oldenburg, A Barateau, N Briand, E Delbarre, ...
Genome biology 18 (1), 1-15, 2017
1042017
Potentials of mean force for protein structure prediction vindicated, formalized and generalized
T Hamelryck, M Borg, M Paluszewski, J Paulsen, J Frellsen, C Andreetta, ...
PloS one 5 (11), e13714, 2010
842010
The regulatory landscape of osteogenic differentiation
AM Håkelien, JC Bryne, KG Harstad, S Lorenz, J Paulsen, J Sun, ...
Stem Cells 32 (10), 2780-2793, 2014
762014
Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization
M Di Stefano, J Paulsen, TG Lien, E Hovig, C Micheletti
Scientific reports 6 (1), 1-12, 2016
502016
Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation
J Paulsen, TML Ali, M Nekrasov, E Delbarre, MO Baudement, S Kurscheid, ...
Nature genetics 51 (5), 835-843, 2019
452019
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization
J Paulsen, GK Sandve, S Gundersen, TG Lien, K Trengereid, E Hovig
Bioinformatics 30 (11), 1620-1622, 2014
422014
Carcinogen susceptibility is regulated by genome architecture and predicts cancer mutagenesis
PE García‐Nieto, EK Schwartz, DA King, J Paulsen, P Collas, RE Herrera, ...
The EMBO journal 36 (19), 2829-2843, 2017
402017
A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions
J Paulsen, EA Rødland, L Holden, M Holden, E Hovig
Nucleic acids research 42 (18), e143-e143, 2014
392014
The Genomic HyperBrowser: an analysis web server for genome-scale data
GK Sandve, S Gundersen, M Johansen, IK Glad, K Gunathasan, L Holden, ...
Nucleic acids research 41 (W1), W133-W141, 2013
392013
Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements
J Paulsen, TG Lien, GK Sandve, L Holden, Ø Borgan, IK Glad, E Hovig
Nucleic acids research 41 (10), 5164-5174, 2013
302013
Manifold based optimization for single-cell 3D genome reconstruction
J Paulsen, O Gramstad, P Collas
PLoS Comput Biol 11 (8), e1004396, 2015
292015
An assessment of mitochondrial variation in Arctic gadoids
S Pálsson, T Källman, J Paulsen, E Árnason
Polar biology 32 (3), 471-479, 2009
242009
The lipodystrophic hotspot lamin A p. R482W mutation deregulates the mesodermal inducer T/Brachyury and early vascular differentiation gene networks
N Briand, AC Guénantin, D Jeziorowska, A Shah, M Mantecon, E Capel, ...
Human molecular genetics 27 (8), 1447-1459, 2018
232018
Computational 3D genome modeling using Chrom3D
J Paulsen, TML Ali, P Collas
Nature protocols 13 (5), 1137-1152, 2018
222018
4D nucleomes in single cells: what can computational modeling reveal about spatial chromatin conformation?
M Sekelja, J Paulsen, P Collas
Genome biology 17 (1), 1-10, 2016
182016
Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes
LM Nordstrand, K Furu, J Paulsen, T Rognes, A Klungland
Nucleic Acids Research, 2012
132012
Lamin A, chromatin and FPLD2: not just a peripheral ménage-à-trois
N Briand, I Cahyani, J Madsen-Østerbye, J Paulsen, T Rønningen, ...
Frontiers in cell and developmental biology 6, 73, 2018
62018
Rapid Evolution of the Intergenic T–P Spacer in the mtDNA of Arctic Cod Arctogadus glacialis
S Pálsson, J Paulsen, E Árnason
Marine Biotechnology 10 (3), 270-277, 2008
52008
Galaxy Portal: interacting with the galaxy platform through mobile devices
C Børnich, I Grytten, E Hovig, J Paulsen, M Čech, GK Sandve
Bioinformatics 32 (11), 1743-1745, 2016
42016
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