Zeynep Kalender Atak
Zeynep Kalender Atak
Research Associate at CRUK Cambridge Institute, University of Cambridge
Verified email at
Cited by
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SCENIC: single-cell regulatory network inference and clustering
S Aibar, CB GonzŠlez-Blas, T Moerman, VA Huynh-Thu, H Imrichova, ...
Nature methods 14 (11), 1083-1086, 2017
iRegulon: from a gene list to a gene regulatory network using large motif and track collections
R Janky, A Verfaillie, H ImrichovŠ, B Van de Sande, L Standaert, ...
PLoS computational biology 10 (7), e1003731, 2014
Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia
K De Keersmaecker, ZK Atak, N Li, C Vicente, S Patchett, T Girardi, ...
Nature genetics 45 (2), 186-190, 2013
Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state
A Verfaillie, H Imrichova, ZK Atak, M Dewaele, F Rambow, G Hulselmans, ...
Nature communications 6 (1), 6683, 2015
Mapping gene regulatory networks from single-cell omics data
MWEJ Fiers, L Minnoye, S Aibar, C Bravo GonzŠlez-Blas, Z Kalender Atak, ...
Briefings in functional genomics 17 (4), 246-254, 2018
i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly
H ImrichovŠ, G Hulselmans, Z Kalender Atak, D Potier, S Aerts
Nucleic acids research 43 (W1), W57-W64, 2015
Comprehensive analysis of transcriptome variation uncovers known and novel driver events in T-cell acute lymphoblastic leukemia
Z Kalender Atak, V Gianfelici, G Hulselmans, K De Keersmaecker, ...
PLoS genetics 9 (12), e1003997, 2013
Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma
J Wouters, Z Kalender-Atak, L Minnoye, KI Spanier, M De Waegeneer, ...
Nature Cell Biology 22 (8), 986-998, 2020
Identification of a novel, recurrent MBTD1‐CXorf67 fusion in low‐grade endometrial stromal sarcoma
B Dewaele, J Przybyl, A Quattrone, J Finalet Ferreiro, V Vanspauwen, ...
International journal of cancer 134 (5), 1112-1122, 2014
Mutation analysis of the tyrosine phosphatase PTPN2 in Hodgkin’s lymphoma and T-cell non-Hodgkin’s lymphoma
M Kleppe, T Tousseyn, E Geissinger, ZK Atak, S Aerts, A Rosenwald, ...
Haematologica 96 (11), 1723, 2011
High accuracy mutation detection in leukemia on a selected panel of cancer genes
Z Kalender Atak, K De Keersmaecker, V Gianfelici, E Geerdens, ...
PloS one 7 (6), e38463, 2012
The Drosophila Homologue of the Amyloid Precursor Protein Is a Conserved Modulator of Wnt PCP Signaling
A Soldano, Z Okray, P Janovska, K TmejovŠ, E Reynaud, A Claeys, J Yan, ...
PLoS biology 11 (5), e1001562, 2013
Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic
A Verfaillie, D Svetlichnyy, H Imrichova, K Davie, M Fiers, ZK Atak, ...
Genome research 26 (7), 882-895, 2016
14q32 rearrangements deregulating BCL11B mark a distinct subgroup of T-lymphoid and myeloid immature acute leukemia
D Di Giacomo, R La Starza, P Gorello, F Pellanera, Z Kalender Atak, ...
Blood, The Journal of the American Society of Hematology 138 (9), 773-784, 2021
Yin Yang 1 orchestrates a metabolic program required for both neural crest development and melanoma formation
S Varum, A Baggiolini, L Zurkirchen, ZK Atak, C Cantý, E Marzorati, ...
Cell stem cell 24 (4), 637-653. e9, 2019
Interpretation of allele-specific chromatin accessibility using cell state–aware deep learning
ZK Atak, II Taskiran, J Demeulemeester, C Flerin, D Mauduit, L Minnoye, ...
Genome research 31 (6), 1082-1096, 2021
Yin Yang 1 sustains biosynthetic demands during brain development in a stage-specific manner
L Zurkirchen, S Varum, S Giger, A Klug, J Hšusel, R Bossart, M Zemke, ...
Nature communications 10 (1), 2192, 2019
Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models
D Svetlichnyy, H Imrichova, M Fiers, Z Kalender Atak, S Aerts
PLoS computational biology 11 (11), e1004590, 2015
A comprehensive inventory of TLX1 controlled long non-coding RNAs in T-cell acute lymphoblastic leukemia through polyA+ and total RNA sequencing
K Verboom, W Van Loocke, PJ Volders, B Decaesteker, FA Cobos, ...
Haematologica 103 (12), e585, 2018
Variations in the exome of the LNCaP prostate cancer cell line
L Spans, ZK Atak, F Van Nieuwerburgh, D Deforce, E Lerut, S Aerts, ...
The Prostate 72 (12), 1317-1327, 2012
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