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Robert Hubley
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Initial sequencing and analysis of the human genome
ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ...
Nature 409 (6822), 860-921, 2001
28906*2001
RepeatMasker
AFA Smit, R Hubley, P Green
Published on the web at http://www. repeatmasker. org, 1996
3250*1996
Analysis of genetic inheritance in a family quartet by whole-genome sequencing
JC Roach, G Glusman, AFA Smit, CD Huff, R Hubley, PT Shannon, ...
Science 328 (5978), 636-639, 2010
12222010
The UCSC Genome Browser database: 2015 update
KR Rosenbloom, J Armstrong, GP Barber, J Casper, H Clawson, ...
Nucleic acids research 43 (D1), D670-D681, 2015
10132015
A common open representation of mass spectrometry data and its application to proteomics research
PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ...
Nature biotechnology 22 (11), 1459-1466, 2004
9122004
The genome of a songbird
WC Warren, DF Clayton, H Ellegren, AP Arnold, LDW Hillier, A Künstner, ...
Nature 464 (7289), 757-762, 2010
8872010
Comparative and demographic analysis of orang-utan genomes
DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ...
Nature 469 (7331), 529, 2011
6382011
Design and implementation of microarray gene expression markup language (MAGE-ML)
PT Spellman, M Miller, J Stewart, C Troup, U Sarkans, S Chervitz, ...
Genome biology 3 (9), research0046. 1, 2002
5742002
RepeatModeler Open-1.0
AFA Smit, R Hubley
Repeat Masker Website, 2010
566*2010
RepeatModeler2: automated genomic discovery of transposable element families
JM Flynn, R Hubley, C Goubert, J Rosen, AG Clark, C Feschotte, ...
BioRxiv, 856591, 2019
5272019
The Dfam database of repetitive DNA families
R Hubley, RD Finn, J Clements, SR Eddy, TA Jones, W Bao, AFA Smit, ...
Nucleic acids research 44 (D1), D81-D89, 2016
4492016
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ...
Science 346 (6215), 1254449, 2014
3152014
Gibbon genome and the fast karyotype evolution of small apes
L Carbone, RA Harris, S Gnerre, KR Veeramah, B Lorente-Galdos, ...
Nature 513 (7517), 195, 2014
3082014
Dfam: a database of repetitive DNA based on profile hidden Markov models
TJ Wheeler, J Clements, SR Eddy, R Hubley, TA Jones, J Jurka, AFA Smit, ...
Nucleic acids research 41 (D1), D70-D82, 2013
2122013
The common marmoset genome provides insight into primate biology and evolution
TMG Sequencing, KC Worley, WC Warren, J Rogers, D Locke, DM Muzny, ...
Nature genetics 46 (8), 850, 2014
1672014
Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome
K Han, MK Konkel, J Xing, H Wang, J Lee, TJ Meyer, CT Huang, ...
science 316 (5822), 238-240, 2007
1172007
A unified test of linkage analysis and rare-variant association for analysis of pedigree sequence data
H Hu, JC Roach, H Coon, SL Guthery, KV Voelkerding, RL Margraf, ...
Nature Biotechnology, 2014
1062014
A call for benchmarking transposable element annotation methods
DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ...
Mobile DNA 6, 2015
852015
Chromosomal haplotypes by genetic phasing of human families
JC Roach, G Glusman, R Hubley, SZ Montsaroff, AK Holloway, ...
The American Journal of Human Genetics 89 (3), 382-397, 2011
702011
Relationship Estimation from Whole-Genome Sequence Data
H Li, G Glusman, H Hu, J Caballero, R Hubley, D Witherspoon, ...
PLoS Genetics 10 (1), e1004144, 2014
692014
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