| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 18946 | 2019 |
| Best practices for analysing microbiomes R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ... Nature Reviews Microbiology 16 (7), 410-422, 2018 | 1705 | 2018 |
| RETRACTED ARTICLE: Microbiome analyses of blood and tissues suggest cancer diagnostic approach GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ... Nature 579 (7800), 567-574, 2020 | 970 | 2020 |
| American gut: an open platform for citizen science microbiome research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... Msystems 3 (3), 10.1128/msystems. 00031-18, 2018 | 790 | 2018 |
| Qiita: rapid, web-enabled microbiome meta-analysis A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ... Nature methods 15 (10), 796-798, 2018 | 621 | 2018 |
| Thermal ablation of tumor cells with antibody-functionalized single-walled carbon nanotubes P Chakravarty, R Marches, NS Zimmerman, ADE Swafford, P Bajaj, ... Proceedings of the National Academy of Sciences 105 (25), 8697-8702, 2008 | 510 | 2008 |
| Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions L Narunsky-Haziza, GD Sepich-Poore, I Livyatan, O Asraf, C Martino, ... Cell 185 (20), 3789-3806. e17, 2022 | 340 | 2022 |
| Age-and sex-dependent patterns of gut microbial diversity in human adults J de la Cuesta-Zuluaga, ST Kelley, Y Chen, JS Escobar, NT Mueller, ... Msystems 4 (4), 10.1128/msystems. 00261-19, 2019 | 307 | 2019 |
| Mass spectrometry searches using MASST M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ... Nature biotechnology 38 (1), 23-26, 2020 | 238 | 2020 |
| Inhibition of DYRK1A and GSK3B induces human β-cell proliferation W Shen, B Taylor, Q Jin, V Nguyen-Tran, S Meeusen, YQ Zhang, ... Nature communications 6 (1), 8372, 2015 | 238 | 2015 |
| Human skin, oral, and gut microbiomes predict chronological age S Huang, N Haiminen, AP Carrieri, R Hu, L Jiang, L Parida, B Russell, ... Msystems 5 (1), 10.1128/msystems. 00630-19, 2020 | 122 | 2020 |
| Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity JP Shaffer, LF Nothias, LR Thompson, JG Sanders, RA Salido, ... Nature microbiology 7 (12), 2128-2150, 2022 | 118 | 2022 |
| Differential activation of hepatic invariant NKT cell subsets plays a key role in progression of nonalcoholic steatohepatitis I Maricic, I Marrero, A Eguchi, R Nakamura, CD Johnson, S Dasgupta, ... The Journal of Immunology 201 (10), 3017-3035, 2018 | 96 | 2018 |
| Impacts of the human gut microbiome on therapeutics Y Vázquez-Baeza, C Callewaert, J Debelius, E Hyde, C Marotz, JT Morton, ... Annual review of pharmacology and toxicology 58 (1), 253-270, 2018 | 93 | 2018 |
| Context-aware dimensionality reduction deconvolutes gut microbial community dynamics C Martino, L Shenhav, CA Marotz, G Armstrong, D McDonald, ... Nature biotechnology 39 (2), 165-168, 2021 | 88 | 2021 |
| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities JP Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ... Biotechniques 70 (3), 149-159, 2021 | 79* | 2021 |
| Phylogeny-aware analysis of metagenome community ecology based on matched reference genomes while bypassing taxonomy Q Zhu, S Huang, A Gonzalez, I McGrath, D McDonald, N Haiminen, ... Msystems 7 (2), e00167-22, 2022 | 74* | 2022 |
| Enhancing untargeted metabolomics using metadata-based source annotation JM Gauglitz, KA West, W Bittremieux, CL Williams, KC Weldon, ... Nature biotechnology 40 (12), 1774-1779, 2022 | 68* | 2022 |
| Gut microbiome in Schizophrenia: altered functional pathways related to immune modulation and atherosclerotic risk TT Nguyen, T Kosciolek, RE Daly, Y Vázquez-Baeza, A Swafford, ... Brain, behavior, and immunity 91, 245-256, 2021 | 64 | 2021 |
| An allele of IKZF1 (Ikaros) conferring susceptibility to childhood acute lymphoblastic leukemia protects against type 1 diabetes ADE Swafford, JMM Howson, LJ Davison, C Wallace, DJ Smyth, ... Diabetes 60 (3), 1041-1044, 2011 | 64 | 2011 |
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
