| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ... Nature Methods 15, 475–476, 2018 | 746 | 2018 |
| Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes Y Che, Y Yang, X Xu, K Břinda, MF Polz, WP Hanage, T Zhang Proceedings of the National Academy of Sciences 118 (6), e2008731118, 2021 | 144 | 2021 |
| Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing K Břinda, A Callendrello, K Ma, D Macfadden, R Lee, T Charalampous, ... Nature Microbiology, 2020 | 108* | 2020 |
| Spaced seeds improve k-mer-based metagenomic classification K Břinda, M Sykulski, G Kucherov Bioinformatics 31 (22), 3584-3592, 2015 | 100 | 2015 |
| Simplitigs as an efficient and scalable representation of de Bruijn graphs K Břinda, M Baym, G Kucherov Genome Biology 22 (96), 2021 | 37 | 2021 |
| Blind friendly maps: Tactile maps for the blind as a part of the public map portal (mapy. cz) P Červenka, K Břinda, M Hanousková, P Hofman, R Seifert ICCHP 2016: 15th International Conference on Computers Helping People with …, 2016 | 28* | 2016 |
| Optimal SARS-CoV-2 vaccine allocation using real-time attack-rate estimates in Rhode Island and Massachusetts TNA Tran, NB Wikle, E Albert, H Inam, E Strong, K Brinda, SM Leighow, ... BMC medicine 19, 1-14, 2021 | 25* | 2021 |
| High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP-and human/animal-associated bacteria Y Che, X Xu, Y Yang, K Břinda, W Hanage, C Yang, T Zhang Microbiome 10 (1), 16, 2022 | 21 | 2022 |
| Novel computational techniques for mapping and classification of Next-Generation Sequencing data K Břinda Phd Thesis, Université Paris-Est, 2016 | 20 | 2016 |
| RNF: a general framework to evaluate NGS read mappers K Břinda, V Boeva, G Kucherov Bioinformatics 32 (1), 136-139, 2016 | 17 | 2016 |
| SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics NB Wikle, TNA Tran, B Gentilesco, SM Leighow, E Albert, ER Strong, ... Science Advances 8 (4), eabf9868, 2022 | 13 | 2022 |
| Prophyle: a phylogeny-based metagenomic classifier using the Burrows-Wheeler transform K Břinda, K Salikhov, S Pignotti, G Kucherov Zenodo10 5281, 2017 | 13* | 2017 |
| Abelian complexity of infinite words associated with quadratic Parry numbers Ľ Balková, K Břinda, O Turek Theoretical Computer Science 412 (45), 6252-6260, 2011 | 13 | 2011 |
| Using Genetic Distance from Archived Samples for the Prediction of Antibiotic Resistance in Escherichia coli DR MacFadden, B Coburn, K Břinda, A Corbeil, N Daneman, D Fisman, ... Antimicrobial agents and chemotherapy 64 (5), 10.1128/aac. 02417-19, 2020 | 11 | 2020 |
| Balances of m-bonacci words K Břinda, E Pelantová, O Turek Fundamenta Informaticae 132 (1), 33-61, 2014 | 11 | 2014 |
| Dynamic read mapping and online consensus calling for better variant detection K Břinda, V Boeva, G Kucherov arXiv preprint arXiv:1605.09070, 2016 | 9 | 2016 |
| Ococo: an online variant and consensus caller K Břinda, V Boeva, G Kucherov arXiv preprint arXiv:1712.01146, 2017 | 8* | 2017 |
| Karel-brinda/nanosim-h: Nanosim-h 1.1. 0.4 K Břinda Zenodo, 2018 | 7* | 2018 |
| Masked superstrings as a unified framework for textual 𝑘-mer set representations O Sladký, P Veselý, K Břinda bioRxiv, 2023.02. 01.526717, 2023 | 3 | 2023 |
| SAMsift: advanced filtering and tagging of SAM K Břinda, M Baym, WP Hanage BAM alignments using Python expressions 10, 2018 | 3 | 2018 |
William HanageHarvard T H Chan School of Public HealthVerified email at hsph.harvard.edu
