Hans-Henrik Stærfeldt
Hans-Henrik Stærfeldt
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RNAmmer: consistent and rapid annotation of ribosomal RNA genes
K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic acids research 35 (9), 3100-3108, 2007
A scored human protein–protein interaction network to catalyze genomic interpretation
T Li, R Wernersson, RB Hansen, H Horn, J Mercer, G Slodkowicz, ...
Nature methods 14 (1), 61-64, 2017
Prediction of human protein function from post-translational modifications and localization features
LJ Jensen, R Gupta, N Blom, D Devos, J Tamames, C Kesmir, H Nielsen, ...
Journal of molecular biology 319 (5), 1257-1265, 2002
Pigs in sequence space: a 0.66 X coverage pig genome survey based on shotgun sequencing
R Wernersson, MH Schierup, FG Jørgensen, J Gorodkin, F Panitz, ...
BMC genomics 6, 1-7, 2005
Prediction of human protein function according to Gene Ontology categories
LJ Jensen, R Gupta, HH Staerfeldt, S Brunak
Bioinformatics 19 (5), 635-642, 2003
A DNA structural atlas for Escherichia coli
AG Pedersen, LJ Jensen, S Brunak, HH Stærfeldt, DW Ussery
Journal of molecular biology 299 (4), 907-930, 2000
RNammer: consistent annotation of rRNA genes in genomic sequences
K Lagesen, PF Hallin, E Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic Acids Res 35 (9), 3100-3108, 2007
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts
D Westergaard, HH Stærfeldt, C Tønsberg, LJ Jensen, S Brunak
PLoS computational biology 14 (2), e1005962, 2018
Origin of replication in circular prokaryotic chromosomes
P Worning, LJ Jensen, PF Hallin, HH Stærfeldt, DW Ussery
Environmental microbiology 8 (2), 353-361, 2006
The Proteome of Seed Development in the Model Legume Lotus japonicus
S Dam, BS Laursen, JH Ørnfelt, B Jochimsen, HH Stærfeldt, C Friis, ...
Plant Physiology 149 (3), 1325-1340, 2009
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
J Gorodkin, S Cirera, J Hedegaard, MJ Gilchrist, F Panitz, C Jørgensen, ...
Genome biology 8, 1-16, 2007
Proteome Analysis of Pod and Seed Development in the Model Legume Lotus japonicus
G Nautrup-Pedersen, S Dam, BS Laursen, AL Siegumfeldt, K Nielsen, ...
Journal of Proteome Research 9 (11), 5715-5726, 2010
MatrixPlot: visualizing sequence constraints.
J Gorodkin, HH Stærfeldt, O Lund, S Brunak
Bioinformatics (Oxford, England) 15 (9), 769-770, 1999
Bias of purine stretches in sequenced chromosomes
D Ussery, DM Soumpasis, S Brunak, HH Stærfeldt, P Worning, A Krogh
Computers & chemistry 26 (5), 531-541, 2002
Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models
RL Allesøe, AT Lundgaard, R Hernández Medina, A Aguayo-Orozco, ...
Nature Biotechnology 41 (3), 399-408, 2023
Genome update: proteome comparisons
TT Binnewies, PF Hallin, HH Stærfeldt, DW Ussery
Microbiology 151 (1), 1-4, 2005
Genetic studies of abdominal MRI data identify genes regulating hepcidin as major determinants of liver iron concentration
HR Wilman, CA Parisinos, N Atabaki-Pasdar, M Kelly, EL Thomas, ...
Journal of Hepatology 71 (3), 594-602, 2019
GeneWiz browser: an interactive tool for visualizing sequenced chromosomes
PF Hallin, HH Stærfeldt, E Rotenberg, TT Binnewies, CJ Benham, ...
Standards in genomic sciences 1, 204-215, 2009
The atlas visualization of genomewide information
M Skovgaard, LJ Jensen, C Friis, HH Stærfeldt, P Worning, S Brunak, ...
Methods in microbiology 33, 49-63, 2002
Text mining of 15 million full-text scientific articles
D Westergaard, HH Stærfeldt, C Tønsberg, LJ Jensen, S Brunak
Biorxiv, 162099, 2017
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