Altuna Akalin

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Boris LenhardImperial College LondonVerified email at imperial.ac.uk
Christopher MasonProfessor of Genomics, Physiology, & Biophysics, Weill Cornell MedicineVerified email at med.cornell.edu
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Francine E. Garrett-BakelmanAssistant Professor of Medicine and Biochemistry and Molecular Genetics, University of VirginiaVerified email at virginia.edu
Maria E. FigueroaProfessor in Biochemistry & Molecular Biology, Sylvester Comprehensive Cancer Center, University ofVerified email at miami.edu
Matthias KormakssonNovartis Pharmaceuticals CorporationVerified email at cornell.edu
Sheng LiAssociate Professor, The Jackson LaboratoryVerified email at jax.org
Carsten O. DaubAssociate Professor, Karolinska InstitutetVerified email at ki.se
harukazu suzukiGroup Director, RIKEN CLSTVerified email at gsc.riken.jp
Xianjun Dong, PhDAssistant Professor, Harvard Medical School; Director of Genomics and Bioinformatics Hub, BWHVerified email at rics.bwh.harvard.edu
Dirk SchübelerDirector, Friedrich Miescher Institute for Biomedical Research, Basel, SwitzerlandVerified email at fmi.ch
Pär EngströmScience for Life Laboratory, Stockholm UniversityVerified email at scilifelab.se
Geoffrey FaulknerQueensland Brain Institute @ Mater Research Institute - University of QueenslandVerified email at mater.uq.edu.au
Tuncay BaubecChair of Genome Biology & Epigenetics, Utrecht UniversityVerified email at uu.nl
David FredmanDirector, Octofox AIVerified email at octofox.ai
TS BeckerVisiting Scholar, Technische Universität Braunschweig, GermanyVerified email at tu-braunschweig.de
Jose Luis Gomez-SkarmetaCentro Andaluz de Biología del DesarrolloVerified email at upo.es
Lukas BurgerResearch Associate, Friedrich Miescher Institute for Biomedical ResearchVerified email at fmi.ch
Professor Kate SchroderClarivate Highly Cited Researcher; Lab Head, Institute for Molecular Bioscience, University of QLDVerified email at imb.uq.edu.au
Jose BessaI3S / IBMC - Institute for Molecular and Cell BiologyVerified email at ibmc.up.pt

Altuna Akalin

Max Delbrück Center for Molecular Medicine

Verified email at mdc-berlin.de - Homepage

Computational Genomics epigenomics gene regulation cancer bioinformatics


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methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles A Akalin, M Kormaksson, S Li, FE Garrett-Bakelman, ME Figueroa, ... Genome biology 13 (10), 1-9, 2012	1516	2012
An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ... Cell 140 (5), 744-752, 2010	802	2010
Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation T Baubec, DF Colombo, C Wirbelauer, J Schmidt, L Burger, AR Krebs, ... Nature 520 (7546), 243-247, 2015	647	2015
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009	413	2009
Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates H Kikuta, M Laplante, P Navratilova, AZ Komisarczuk, PG Engström, ... Genome research 17 (5), 545-555, 2007	376	2007
Complex loci in human and mouse genomes PG Engström, H Suzuki, N Ninomiya, A Akalin, L Sessa, G Lavorgna, ... PLoS genetics 2 (4), e47, 2006	347	2006
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages K Schroder, KM Irvine, MS Taylor, NJ Bokil, KA Le Cao, KA Masterman, ... Proceedings of the National Academy of Sciences 109 (16), E944-E953, 2012	321	2012
Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia A Akalin, FE Garrett-Bakelman, M Kormaksson, J Busuttil, L Zhang, ... PLoS genetics 8 (6), e1002781, 2012	318	2012
DNA Hydroxymethylation Profiling Reveals that WT1 Mutations Result in Loss of TET2 Function in Acute Myeloid Leukemia R Rampal, A Akalin, J Madzo, A Vasanthakumar, E Pronier, J Patel, Y Li, ... Cell Reports, 2014	291	2014
Genomation: a toolkit to summarize, annotate and visualize genomic intervals A Akalin, V Franke, K Vlahoviček, CE Mason, D Schübeler Bioinformatics 31 (7), 1127-1129, 2015	242	2015
RNA localization is a key determinant of neurite-enriched proteome A Zappulo, D Van Den Bruck, C Ciolli Mattioli, V Franke, K Imami, ... Nature communications 8 (1), 583, 2017	187	2017
Two independent transcription initiation codes overlap on vertebrate core promoters V Haberle, N Li, Y Hadzhiev, C Plessy, C Previti, C Nepal, J Gehrig, ... Nature 507 (7492), 381-385, 2014	185	2014
Zebrafish enhancer detection (ZED) vector: A new tool to facilitate transgenesis and the functional analysis of cis‐regulatory regions in zebrafish J Bessa, JJ Tena, E de la Calle‐Mustienes, A Fernández‐Miñán, ... Developmental dynamics: an official publication of the American Association …, 2009	184	2009
Induction of sarcomas by mutant IDH2 C Lu, S Venneti, A Akalin, F Fang, PS Ward, RG DeMatteo, AM Intlekofer, ... Genes & development 27 (18), 1986-1998, 2013	168	2013
Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy E Wyler, K Mösbauer, V Franke, A Diag, LT Gottula, R Arsiè, F Klironomos, ... IScience 24 (3), 102151, 2021	140	2021
Strategies for analyzing bisulfite sequencing data K Wreczycka, A Gosdschan, D Yusuf, B Grüning, Y Assenov, A Akalin Journal of biotechnology 261, 105-115, 2017	132	2017
DoRiNA 2.0—upgrading the doRiNA database of RNA interactions in post-transcriptional regulation K Blin, C Dieterich, R Wurmus, N Rajewsky, M Landthaler, A Akalin Nucleic acids research 43 (D1), D160-D167, 2015	130	2015
Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis C Nepal, Y Hadzhiev, C Previti, V Haberle, N Li, H Takahashi, ... Genome research 23 (11), 1938-1950, 2013	126	2013
Transcriptional features of genomic regulatory blocks A Akalin, D Fredman, E Arner, X Dong, JC Bryne, H Suzuki, CO Daub, ... Genome biology 10 (4), 1-13, 2009	117	2009
An optimized algorithm for detecting and annotating regional differential methylation S Li, FE Garrett-Bakelman, A Akalin, P Zumbo, R Levine, BL To, ID Lewis, ... BMC bioinformatics 14 (5), 1-9, 2013	115	2013

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