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Bernhard Renard
Bernhard Renard
Verified email at hpi.de - Homepage
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Year
Critical Assessment of Metagenome Interpretation [mdash] a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
5092017
Concise representation of mass spectrometry images by probabilistic latent semantic analysis
M Hanselmann, M Kirchner, BY Renard, ER Amstalden, K Glunde, ...
Analytical chemistry 80 (24), 9649-9658, 2008
1202008
Individualized vaccines for cancer
U Sahin, S Kreiter, M Diken, J Diekmann, M Koslowski, C Britten, ...
US Patent 10,738,355, 2020
1032020
Docking small peptides remains a great challenge: an assessment using AutoDock Vina
R Rentzsch, BY Renard
Briefings in bioinformatics 16 (6), 1045-1056, 2015
992015
NITPICK: peak identification for mass spectrometry data
BY Renard, M Kirchner, H Steen, JAJ Steen, FA Hamprecht
BMC bioinformatics 9 (1), 1-16, 2008
972008
Toward digital staining using imaging mass spectrometry and random forests
M Hanselmann, U Köthe, M Kirchner, BY Renard, ER Amstalden, ...
Journal of proteome research 8 (7), 3558-3567, 2009
942009
Life cycle stage-resolved proteomic analysis of the excretome/secretome from Strongyloides ratti—identification of stage-specific proteases
H Soblik, AE Younis, M Mitreva, BY Renard, M Kirchner, F Geisinger, ...
Molecular & Cellular Proteomics 10 (12), M111. 010157, 2011
882011
When less can yield more–computational preprocessing of MS/MS spectra for peptide identification
BY Renard, M Kirchner, F Monigatti, AR Ivanov, J Rappsilber, D Winter, ...
Proteomics 9 (21), 4978-4984, 2009
832009
Metagenomic abundance estimation and diagnostic testing on species level
MS Lindner, BY Renard
Nucleic acids research 41 (1), e10-e10, 2013
802013
Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition
N Özlü, F Monigatti, BY Renard, CM Field, H Steen, TJ Mitchison, ...
Molecular & Cellular Proteomics 9 (2), 336-350, 2010
802010
The proteome of the isolated Chlamydia trachomatis containing vacuole reveals a complex trafficking platform enriched for retromer components
L Aeberhard, S Banhart, M Fischer, N Jehmlich, L Rose, S Koch, M Laue, ...
PLoS Pathog 11 (6), e1004883, 2015
672015
Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification?
T Muth, BY Renard
Briefings in bioinformatics 19 (5), 954-970, 2018
562018
Metaproteomic data analysis at a glance: advances in computational microbial community proteomics
T Muth, BY Renard, L Martens
Expert Review of Proteomics 13 (8), 757-769, 2016
562016
Proteomic analysis of protein carbonylation: a useful tool to unravel nanoparticle toxicity mechanisms
MD Driessen, S Mues, A Vennemann, B Hellack, A Bannuscher, ...
Particle and Fibre Toxicology 12 (1), 1-18, 2015
512015
Deuteration distribution estimation with improved sequence coverage for HX/MS experiments
X Lou, M Kirchner, BY Renard, U Köthe, S Boppel, C Graf, CT Lee, ...
Bioinformatics 26 (12), 1535-1541, 2010
452010
Challenges and promise at the interface of metaproteomics and genomics: an overview of recent progress in metaproteogenomic data analysis
H Schiebenhoefer, T Van Den Bossche, S Fuchs, BY Renard, T Muth, ...
Expert review of proteomics 16 (5), 375-390, 2019
412019
MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms
F Zickmann, BY Renard
Bioinformatics 31 (12), i106-i115, 2015
412015
SIMA: simultaneous multiple alignment of LC/MS peak lists
B Voss, M Hanselmann, BY Renard, MS Lindner, U Köthe, M Kirchner, ...
Bioinformatics 27 (7), 987-993, 2011
412011
PaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data
C Deneke, R Rentzsch, BY Renard
Scientific reports 7 (1), 1-13, 2017
402017
A Potential Golden Age to Come—Current Tools, Recent Use Cases, and Future Avenues for De Novo Sequencing in Proteomics
T Muth, F Hartkopf, M Vaudel, BY Renard
Proteomics 18 (18), 1700150, 2018
392018
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