| Critical Assessment of Metagenome Interpretation [mdash] a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 509 | 2017 |
| Concise representation of mass spectrometry images by probabilistic latent semantic analysis M Hanselmann, M Kirchner, BY Renard, ER Amstalden, K Glunde, ... Analytical chemistry 80 (24), 9649-9658, 2008 | 120 | 2008 |
| Individualized vaccines for cancer U Sahin, S Kreiter, M Diken, J Diekmann, M Koslowski, C Britten, ... US Patent 10,738,355, 2020 | 103 | 2020 |
| Docking small peptides remains a great challenge: an assessment using AutoDock Vina R Rentzsch, BY Renard Briefings in bioinformatics 16 (6), 1045-1056, 2015 | 99 | 2015 |
| NITPICK: peak identification for mass spectrometry data BY Renard, M Kirchner, H Steen, JAJ Steen, FA Hamprecht BMC bioinformatics 9 (1), 1-16, 2008 | 97 | 2008 |
| Toward digital staining using imaging mass spectrometry and random forests M Hanselmann, U Köthe, M Kirchner, BY Renard, ER Amstalden, ... Journal of proteome research 8 (7), 3558-3567, 2009 | 94 | 2009 |
| Life cycle stage-resolved proteomic analysis of the excretome/secretome from Strongyloides ratti—identification of stage-specific proteases H Soblik, AE Younis, M Mitreva, BY Renard, M Kirchner, F Geisinger, ... Molecular & Cellular Proteomics 10 (12), M111. 010157, 2011 | 88 | 2011 |
| When less can yield more–computational preprocessing of MS/MS spectra for peptide identification BY Renard, M Kirchner, F Monigatti, AR Ivanov, J Rappsilber, D Winter, ... Proteomics 9 (21), 4978-4984, 2009 | 83 | 2009 |
| Metagenomic abundance estimation and diagnostic testing on species level MS Lindner, BY Renard Nucleic acids research 41 (1), e10-e10, 2013 | 80 | 2013 |
| Binding partner switching on microtubules and aurora-B in the mitosis to cytokinesis transition N Özlü, F Monigatti, BY Renard, CM Field, H Steen, TJ Mitchison, ... Molecular & Cellular Proteomics 9 (2), 336-350, 2010 | 80 | 2010 |
| The proteome of the isolated Chlamydia trachomatis containing vacuole reveals a complex trafficking platform enriched for retromer components L Aeberhard, S Banhart, M Fischer, N Jehmlich, L Rose, S Koch, M Laue, ... PLoS Pathog 11 (6), e1004883, 2015 | 67 | 2015 |
| Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification? T Muth, BY Renard Briefings in bioinformatics 19 (5), 954-970, 2018 | 56 | 2018 |
| Metaproteomic data analysis at a glance: advances in computational microbial community proteomics T Muth, BY Renard, L Martens Expert Review of Proteomics 13 (8), 757-769, 2016 | 56 | 2016 |
| Proteomic analysis of protein carbonylation: a useful tool to unravel nanoparticle toxicity mechanisms MD Driessen, S Mues, A Vennemann, B Hellack, A Bannuscher, ... Particle and Fibre Toxicology 12 (1), 1-18, 2015 | 51 | 2015 |
| Deuteration distribution estimation with improved sequence coverage for HX/MS experiments X Lou, M Kirchner, BY Renard, U Köthe, S Boppel, C Graf, CT Lee, ... Bioinformatics 26 (12), 1535-1541, 2010 | 45 | 2010 |
| Challenges and promise at the interface of metaproteomics and genomics: an overview of recent progress in metaproteogenomic data analysis H Schiebenhoefer, T Van Den Bossche, S Fuchs, BY Renard, T Muth, ... Expert review of proteomics 16 (5), 375-390, 2019 | 41 | 2019 |
| MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms F Zickmann, BY Renard Bioinformatics 31 (12), i106-i115, 2015 | 41 | 2015 |
| SIMA: simultaneous multiple alignment of LC/MS peak lists B Voss, M Hanselmann, BY Renard, MS Lindner, U Köthe, M Kirchner, ... Bioinformatics 27 (7), 987-993, 2011 | 41 | 2011 |
| PaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data C Deneke, R Rentzsch, BY Renard Scientific reports 7 (1), 1-13, 2017 | 40 | 2017 |
| A Potential Golden Age to Come—Current Tools, Recent Use Cases, and Future Avenues for De Novo Sequencing in Proteomics T Muth, F Hartkopf, M Vaudel, BY Renard Proteomics 18 (18), 1700150, 2018 | 39 | 2018 |
