|ITS1 versus ITS2 as DNA metabarcodes for fungi|
R Blaalid, S Kumar, RH Nilsson, K Abarenkov, PM Kirk, H Kauserud
Molecular Ecology Resources, 2013
|AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses|
S Kumar, Å Skjæveland, RJS Orr, P Enger, T Ruden, BH Mevik, F Burki, ...
BMC bioinformatics 10 (1), 1-7, 2009
|Changes in the root‐associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing|
R BLAALID, TOR CARLSEN, S KUMAR, R HALVORSEN, KI UGLAND, ...
Molecular Ecology, 2011
|Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic chromalveolates|
F Burki, Y Inagaki, J Bråte, JM Archibald, PJ Keeling, T Cavalier-Smith, ...
Genome biology and evolution 1, 231, 2009
|Environmental microbiology through the lens of High-Throughput DNA Sequencing: Synopsis of current platforms and bioinformatics approaches|
R Logares, THA Haverkamp, S Kumar, A Lanzén, AJ Nederbragt, ...
Journal of Microbiological Methods, 2012
|CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation|
S Kumar, T Carlsen, BH Mevik, P Enger, R Blaalid, K Shalchian-Tabrizi, ...
BMC bioinformatics 12 (1), 182, 2011
|High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples|
H Kauserud, S Kumar, AK Brysting, J Nordén, T Carlsen
Mycorrhiza, 1-7, 2011
|Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome|
MR Aure, V Vitelli, S Jernström, S Kumar, M Krohn, EU Due, TH Haukaas, ...
Breast Cancer Research 19 (1), 1-18, 2017
|BLAST output visualization in the new sequencing era|
RS Neumann, S Kumar, K Shalchian-Tabrizi
Briefings in Bioinformatics, 2013
|Identification of a natural killer cell receptor allele that prolongs survival of cytomegalovirus-positive glioblastoma patients|
M Dominguez–Valentin, AG Navarro, AM Rahman, S Kumar, C Retière, ...
Cancer research 76 (18), 5326-5336, 2016
|Widespread alternative exon usage in clinically distinct subtypes of Invasive Ductal Carcinoma|
SS Bjørklund, A Panda, S Kumar, M Seiler, D Robinson, J Gheeya, M Yao, ...
Scientific reports 7 (1), 1-15, 2017
|BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data|
RS Neumann, S Kumar, THA Haverkamp, K Shalchian-Tabrizi
BMC bioinformatics 15 (1), 1-11, 2014
|Serum cytokine levels in breast cancer patients during neoadjuvant treatment with bevacizumab|
S Jabeen, M Zucknick, M Nome, R Dannenfelser, T Fleischer, S Kumar, ...
Oncoimmunology 7 (11), e1457598, 2018
|Noninvasive profiling of serum cytokines in breast cancer patients and clinicopathological characteristics|
S Jabeen, JA Espinoza, LA Torland, M Zucknick, S Kumar, ...
Oncoimmunology 8 (2), e1537691, 2019
|Toward personalized computer simulation of breast cancer treatment: A multiscale pharmacokinetic and pharmacodynamic model informed by multitype patient data|
X Lai, OM Geier, T Fleischer, Ø Garred, E Borgen, SW Funke, S Kumar, ...
Cancer research 79 (16), 4293-4304, 2019
|Profiling the transcriptome response of Atlantic salmon head kidney to formalin-killed Renibacterium salmoninarum|
K Eslamloo, S Kumar, A Caballero-Solares, H Gnanagobal, J Santander, ...
Fish & shellfish immunology 98, 937-949, 2020
|Expression of an estrogen-regulated variant transcript of the peroxisomal branched chain fatty acid oxidase ACOX2 in breast carcinomas|
SS Bjørklund, VN Kristensen, M Seiler, S Kumar, GIG Alnæs, Y Ming, ...
BMC cancer 15 (1), 1-13, 2015
|BIR pipeline for preparation of phylogenomic data|
S Kumar, AK Krabberød, RS Neumann, K Michalickova, S Zhao, X Zhang, ...
Evolutionary Bioinformatics 11, EBO. S10189, 2015
|Associations between clinical symptoms, plasma norepinephrine and deregulated immune gene networks in subgroups of adolescent with Chronic Fatigue Syndrome|
CB Nguyen, S Kumar, M Zucknick, VN Kristensen, J Gjerstad, H Nilsen, ...
Brain, behavior, and immunity 76, 82-96, 2019
|Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: Evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense …|
N Umasuthan, X Xue, A Caballero-Solares, S Kumar, JD Westcott, Z Chen, ...
International journal of molecular sciences 21 (7), 2417, 2020