| ITS1 versus ITS2 as DNA metabarcodes for fungi R Blaalid, S Kumar, RH Nilsson, K Abarenkov, PM Kirk, H Kauserud Molecular Ecology Resources, 2013 | 381 | 2013 |
| AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses S Kumar, Å Skjæveland, RJS Orr, P Enger, T Ruden, BH Mevik, F Burki, ... BMC bioinformatics 10 (1), 1-7, 2009 | 261 | 2009 |
| Changes in the root‐associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing R BLAALID, TOR CARLSEN, S KUMAR, R HALVORSEN, KI UGLAND, ... Molecular Ecology, 2011 | 197 | 2011 |
| Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic chromalveolates F Burki, Y Inagaki, J Bråte, JM Archibald, PJ Keeling, T Cavalier-Smith, ... Genome biology and evolution 1, 231, 2009 | 172 | 2009 |
| Environmental microbiology through the lens of High-Throughput DNA Sequencing: Synopsis of current platforms and bioinformatics approaches R Logares, THA Haverkamp, S Kumar, A Lanzén, AJ Nederbragt, ... Journal of Microbiological Methods, 2012 | 158 | 2012 |
| CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation S Kumar, T Carlsen, BH Mevik, P Enger, R Blaalid, K Shalchian-Tabrizi, ... BMC bioinformatics 12 (1), 182, 2011 | 88 | 2011 |
| Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome MR Aure, V Vitelli, S Jernström, S Kumar, M Krohn, EU Due, TH Haukaas, ... Breast Cancer Research 19 (1), 1-18, 2017 | 83 | 2017 |
| High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples H Kauserud, S Kumar, AK Brysting, J Nordén, T Carlsen Mycorrhiza, 1-7, 2011 | 76 | 2011 |
| Widespread alternative exon usage in clinically distinct subtypes of invasive ductal carcinoma SS Bjørklund, A Panda, S Kumar, M Seiler, D Robinson, J Gheeya, M Yao, ... Scientific reports 7 (1), 1-15, 2017 | 34 | 2017 |
| Identification of a Natural Killer Cell Receptor Allele That Prolongs Survival of Cytomegalovirus-Positive Glioblastoma PatientsKIR2DS4* 00101 Allele and Cytomegalovirus in … M Dominguez–Valentin, A Gras Navarro, AM Rahman, S Kumar, ... Cancer Research 76 (18), 5326-5336, 2016 | 30 | 2016 |
| BLAST output visualization in the new sequencing era RS Neumann, S Kumar, K Shalchian-Tabrizi Briefings in Bioinformatics, 2013 | 28 | 2013 |
| Profiling the transcriptome response of Atlantic salmon head kidney to formalin-killed Renibacterium salmoninarum K Eslamloo, S Kumar, A Caballero-Solares, H Gnanagobal, J Santander, ... Fish & Shellfish Immunology 98, 937-949, 2020 | 23 | 2020 |
| Noninvasive profiling of serum cytokines in breast cancer patients and clinicopathological characteristics S Jabeen, JA Espinoza, LA Torland, M Zucknick, S Kumar, ... Oncoimmunology 8 (2), e1537691, 2019 | 22 | 2019 |
| BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data RS Neumann, S Kumar, THA Haverkamp, K Shalchian-Tabrizi BMC bioinformatics 15 (1), 1-11, 2014 | 21 | 2014 |
| Serum cytokine levels in breast cancer patients during neoadjuvant treatment with bevacizumab S Jabeen, M Zucknick, M Nome, R Dannenfelser, T Fleischer, S Kumar, ... Oncoimmunology 7 (11), e1457598, 2018 | 19 | 2018 |
| Expression of an estrogen-regulated variant transcript of the peroxisomal branched chain fatty acid oxidase ACOX2 in breast carcinomas SS Bjørklund, VN Kristensen, M Seiler, S Kumar, GIG Alnæs, Y Ming, ... BMC cancer 15 (1), 1-13, 2015 | 18 | 2015 |
| Transcriptomic profiling in fins of Atlantic salmon parasitized with sea lice: evidence for an early imbalance between chalimus-induced immunomodulation and the host’s defense … N Umasuthan, X Xue, A Caballero-Solares, S Kumar, JD Westcott, Z Chen, ... International journal of molecular sciences 21 (7), 2417, 2020 | 16 | 2020 |
| Toward personalized computer simulation of breast cancer treatment: A multiscale pharmacokinetic and pharmacodynamic model informed by multitype patient data X Lai, OM Geier, T Fleischer, Ø Garred, E Borgen, SW Funke, S Kumar, ... Cancer research 79 (16), 4293-4304, 2019 | 16 | 2019 |
| Transcriptomic Profiling of the Adaptive and Innate Immune Responses of Atlantic Salmon to Renibacterium salmoninarum Infection K Eslamloo, A Caballero-Solares, SM Inkpen, M Emam, S Kumar, ... Frontiers in immunology 11, 567838, 2020 | 13 | 2020 |
| BIR pipeline for preparation of phylogenomic data S Kumar, AK Krabberød, RS Neumann, K Michalickova, S Zhao, X Zhang, ... Evolutionary Bioinformatics 11, EBO. S10189, 2015 | 9 | 2015 |
Kamran Shalchian-TabriziDepartment of Biosciences, University of OsloVerified email at ibv.uio.no
