| RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads P Novák, P Neumann, J Pech, J Steinhaisl, J Macas Bioinformatics 29 (6), 792-793, 2013 | 752 | 2013 |
| Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data P Novák, P Neumann, J Macas BMC bioinformatics 11, 1-12, 2010 | 543 | 2010 |
| A reference genome for pea provides insight into legume genome evolution J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie, G Aubert, PE Bayer, ... Nature genetics 51 (9), 1411-1422, 2019 | 466 | 2019 |
| Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification P Neumann, P Novák, N Hoštáková, J Macas Mobile DNA 10, 1-17, 2019 | 310 | 2019 |
| TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads P Novák, L Ávila Robledillo, A Koblížková, I Vrbová, P Neumann, J Macas Nucleic acids research 45 (12), e111-e111, 2017 | 290 | 2017 |
| Repeatless and repeat-based centromeres in potato: implications for centromere evolution Z Gong, Y Wu, A Koblížková, GA Torres, K Wang, M Iovene, P Neumann, ... The Plant Cell 24 (9), 3559-3574, 2012 | 257 | 2012 |
| Branched chain amino acid metabolism profiles in progressive human nonalcoholic fatty liver disease AD Lake, P Novak, P Shipkova, N Aranibar, DG Robertson, MD Reily, ... Amino acids 47, 603-615, 2015 | 232 | 2015 |
| Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences MM Martis, S Klemme, AM Banaei-Moghaddam, FR Blattner, J Macas, ... Proceedings of the National Academy of Sciences 109 (33), 13343-13346, 2012 | 225 | 2012 |
| In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae J Macas, P Novák, J Pellicer, J Čížková, A Koblížková, P Neumann, ... PloS one 10 (11), e0143424, 2015 | 216 | 2015 |
| Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2 P Novák, P Neumann, J Macas Nature Protocols 15 (11), 3745-3776, 2020 | 207 | 2020 |
| Decreased hepatotoxic bile acid composition and altered synthesis in progressive human nonalcoholic fatty liver disease AD Lake, P Novak, P Shipkova, N Aranibar, D Robertson, MD Reily, Z Lu, ... Toxicology and applied pharmacology 268 (2), 132-140, 2013 | 189 | 2013 |
| Agglomerative epigenetic aberrations are a common event in human breast cancer P Novak, T Jensen, MM Oshiro, GS Watts, CJ Kim, BW Futscher Cancer research 68 (20), 8616, 2008 | 185 | 2008 |
| The adaptive endoplasmic reticulum stress response to lipotoxicity in progressive human nonalcoholic fatty liver disease AD Lake, P Novak, RN Hardwick, B Flores-Keown, F Zhao, WT Klimecki, ... Toxicological sciences 137 (1), 26-35, 2014 | 176 | 2014 |
| Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived … S Renny-Byfield, M Chester, A Kovařík, SC Le Comber, MA Grandbastien, ... Molecular biology and evolution 28 (10), 2843-2854, 2011 | 172 | 2011 |
| Analysis of Global and Absorption, Distribution, Metabolism, and Elimination Gene Expression in the Progressive Stages of Human Nonalcoholic Fatty Liver Disease AD Lake, P Novak, CD Fisher, JP Jackson, RN Hardwick, DD Billheimer, ... Drug Metabolism and Disposition 39 (10), 1954-1960, 2011 | 168 | 2011 |
| Stretching the rules: monocentric chromosomes with multiple centromere domains P Neumann, A Navratilova, E Schroeder-Reiter, A Koblížková, ... PLoS genetics 8 (6), e1002777, 2012 | 153 | 2012 |
| Genomic repeat abundances contain phylogenetic signal S Dodsworth, MW Chase, LJ Kelly, IJ Leitch, J Macas, P Novak, ... Systematic biology 64 (1), 112-126, 2015 | 145 | 2015 |
| Epigenetic remodeling during arsenical-induced malignant transformation TJ Jensen, P Novak, KE Eblin, AJ Gandolfi, BW Futscher Carcinogenesis 29 (8), 1500-1508, 2008 | 145 | 2008 |
| Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size LJ Kelly, S Renny‐Byfield, J Pellicer, J Macas, P Novák, P Neumann, ... New Phytologist 208 (2), 596-607, 2015 | 142 | 2015 |
| Epigenetic inactivation of the HOXA gene cluster in breast cancer P Novak, T Jensen, MM Oshiro, RJ Wozniak, M Nouzova, GS Watts, ... Cancer research 66 (22), 10664-10670, 2006 | 139 | 2006 |
Jiri MacasPrincipal investigator at Biology Centre ASCR, Ceske Budejovice, Czech RepublicVerified email at umbr.cas.cz
