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Christopher D Cooper
Christopher D Cooper
Assistant Professor, Departamento de Ingeniería Mecánica, Universidad Técnica Federico Santa María
Verifisert e-postadresse på usm.cl - Startside
Tittel
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A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers
CD Cooper, JP Bardhan, LA Barba
Computer physics communications 185 (3), 720-729, 2014
562014
Free Energies of the Disassembly of Viral Capsids from a Multiscale Molecular Simulation Approach
M Martínez, CD Cooper, AB Poma, HV Guzman
Journal of Chemical Information and Modeling 60 (2), 974-981, 2019
262019
Probing protein orientation near charged nanosurfaces for simulation-assisted biosensor design
CD Cooper, NC Clementi, LA Barba
The Journal of Chemical Physics 143 (12), 2015
182015
Extending the Solvation-Layer Interface Condition Continum Electrostatic Model to a Linearized Poisson-Boltzmann Solvent
AM Tabrizi, S Goossens, AM Rahimi, CD Cooper, MG Knepley, ...
Journal of chemical theory and computation, 2897-2914, 2017
142017
Poisson–Boltzmann model for protein–surface electrostatic interactions and grid-convergence study using the PyGBe code
CD Cooper, LA Barba
Computer Physics Communications 202, 23-32, 2016
142016
PyGBe: Python, GPUs and Boundary elements for biomolecular electrostatics
CD Cooper, NC Clementi, G Forsyth, LA Barba
Journal of Open Source Software 1 (4), 43, 2016
122016
Validation of the PyGBe code for Poisson-Boltzmann equation with boundary element methods
CD Cooper, LA Barba
Technical Report on figshare, CC-BY license, 2013
102013
Panel-free boundary conditions for viscous vortex methods
C Cooper, L Barba
19th AIAA Computational Fluid Dynamics, 3546, 2009
102009
Quantitative electrostatic force tomography for virus capsids in interaction with an approaching nanoscale probe
CD Cooper, I Addison-Smith, HV Guzman
Nanoscale 14 (34), 12232-12237, 2022
82022
Modeling of the electrostatic interaction and catalytic activity of [NiFe] hydrogenases on a planar electrode
MA Ruiz-Rodríguez, CD Cooper, W Rocchia, M Casalegno, ...
The Journal of Physical Chemistry B 126 (43), 8777-8790, 2022
72022
Towards optimal boundary integral formulations of the Poisson–Boltzmann equation for molecular electrostatics
SD Search, CD Cooper, E Van't Wout
Journal of Computational Chemistry 43 (10), 674-691, 2022
72022
Predicting the orientation of adsorbed proteins steered with electric fields using a simple electrostatic model
SA Urzúa, PY Sauceda-Oloño, CD García, CD Cooper
The Journal of Physical Chemistry B 126 (28), 5231-5240, 2022
62022
High-productivity, high-performance workflow for virus-scale electrostatic simulations with Bempp-Exafmm
T Wang, CD Cooper, T Betcke, LA Barba
arXiv preprint arXiv:2103.01048, 2021
62021
Computational nanoplasmonics in the quasistatic limit for biosensing applications
NC Clementi, CD Cooper, LA Barba
Physical Review E 100 (6), 063305, 2019
62019
A Boundary‐Integral Approach for the Poisson–Boltzmann Equation with Polarizable Force Fields
CD Cooper
Journal of computational chemistry 40 (18), 1680-1692, 2019
62019
PyGBe-LSPR: Python and GPU Boundary-integral solver for electrostatics
NC Clementi, G Forsyth, CD Cooper, LA Barba
The Journal of Open Source Software 2 (19), 306, 2017
62017
GPU Computing with CUDA
C Cooper
College of Engineering, UTFSM, Valparıso, Chile, 2011
52011
Efficient mesh refinement for the Poisson‐Boltzmann equation with boundary elements
V Ramm, JH Chaudhry, CD Cooper
Journal of Computational Chemistry 42 (12), 855-869, 2021
32021
Coupling finite and boundary element methods to solve the Poisson–Boltzmann equation for electrostatics in molecular solvation
M Bosy, MW Scroggs, T Betcke, E Burman, CD Cooper
Journal of Computational Chemistry 45 (11), 787-797, 2024
22024
GPU Computing with CUDA Lecture 2-CUDA Memories
C Cooper
Technical report, 2011
22011
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Artikler 1–20