Padraig Gleeson

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Sharon CrookArizona State UniversityVerified email at asu.edu
Matteo CantarelliResearch Associate, University College LondonVerified email at ucl.ac.uk
Andrew DavisonResearch Scientist in Neuroinformatics and Computational Neuroscience, NeuroPSI, CNRSVerified email at cnrs.fr
Stephen D LarsonOpenWorm FoundationVerified email at openworm.org
Matteo FarinellaColumbia UniversityVerified email at columbia.edu
Sergey KhayrulinA.P. Ershov INSTITUTE OF INFORMATICS SYSTEMS Russian Academy of Sciences Siberian BranchVerified email at iis.nsk.su
Andrey PalyanovA.P. Ershov Intitute of Informatics SystemsVerified email at iis.nsk.su
Volker SteuberProfessor of Computational Neuroscience, University of HertfordshireVerified email at herts.ac.uk
Michael HuckaCalifornia Institute of TechnologyVerified email at caltech.edu
Dagmar WaltemathProfessor of Medical InformaticsVerified email at uni-greifswald.de
David Phillip NickersonAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Martin GolebiewskiHITS gGmbH, Heidelberg (Germany)Verified email at h-its.org
Subhasis RayAssistant Professor, Plaksha UniversityVerified email at plaksha.edu.in
Michael VellaNVIDIAVerified email at nvidia.com
Eilif B. MullerUniversity of Montreal, CHU Ste-Justine Research Center, Quebec Artificial Intelligence InstituteVerified email at umontreal.ca
Upinder Singh BhallaNational Centre for Biological Sciences, TIFR, BangaloreVerified email at ncbs.res.in
Salvador Dura-BernalAssistant Professor, State University of New York (SUNY) DownstateVerified email at downstate.edu
Thomas Marston MorseYaleVerified email at yale.edu
James HokansonMedical College of WisconsinVerified email at mcw.edu
Ramin HasaniMassachusetts Institute of TechnologyVerified email at mit.edu

Padraig Gleeson

Department of Neuroscience, Physiology and Pharmacology, University College London

Verified email at ucl.ac.uk - Homepage

Computational Neuroscience


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Updated energy budgets for neural computation in the neocortex and cerebellum C Howarth, P Gleeson, D Attwell Journal of Cerebral Blood Flow & Metabolism 32 (7), 1222-1232, 2012	621	2012
NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail P Gleeson, S Crook, RC Cannon, ML Hines, GO Billings, M Farinella, ... PLoS Comput Biol 6 (6), e1000815, 2010	329	2010
Rapid desynchronization of an electrically coupled interneuron network with sparse excitatory synaptic input K Vervaeke, A Lőrincz, P Gleeson, M Farinella, Z Nusser, RA Silver Neuron 67 (3), 435-451, 2010	211	2010
neuroConstruct: a tool for modeling networks of neurons in 3D space P Gleeson, V Steuber, RA Silver Neuron 54 (2), 219-235, 2007	208	2007
OpenWorm: an open-science approach to modelling Caenorhabditis elegans B Szigeti, P Gleeson, M Vella, S Khayrulin, A Palyanov, J Hokanson, ... Name: Frontiers in Computational Neuroscience 8, 137, 2014	153	2014
The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex S Ramaswamy, JD Courcol, M Abdellah, SR Adaszewski, N Antille, ... Frontiers in Neural Circuits 9, 44, 2015	135	2015
OpenWorm: overview and recent advances in integrative biological simulation of Caenorhabditis elegans GP Sarma, CW Lee, T Portegys, V Ghayoomie, T Jacobs, B Alicea, ... Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018	113	2018
Toward standard practices for sharing computer code and programs in neuroscience SJ Eglen, B Marwick, YO Halchenko, M Hanke, S Sufi, P Gleeson, ... Nature Neuroscience 20 (6), 770-773, 2017	102	2017
LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2 RC Cannon, P Gleeson, S Crook, G Ganapathy, B Marin, E Piasini, ... Frontiers in Neuroinformatics 8, 2014	101	2014
NetPyNE: a tool for data-driven multiscale modeling of brain circuits S Dura-Bernal, B Suter, P Gleeson, M Cantarelli, A Quintana, F Rodriguez, ... bioRxiv, 461137, 2018	88	2018
Interoperability of neuroscience modeling software: current status and future directions RC Cannon, MO Gewaltig, P Gleeson, US Bhalla, H Cornelis, ML Hines, ... Neuroinformatics 5 (2), 127-138, 2007	81	2007
Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits P Gleeson, M Cantarelli, B Marin, A Quintana, M Earnshaw, E Piasini, ... bioRxiv, 229484, 2018	62	2018
MorphML: level 1 of the NeuroML standards for neuronal morphology data and model specification S Crook, P Gleeson, F Howell, J Svitak, RA Silver Neuroinformatics 5 (2), 96-104, 2007	62	2007
A Commitment to Open Source in Neuroscience P Gleeson, AP Davison, RA Silver, GA Ascoli Neuron 96 (5), 964-965, 2017	58	2017
Harmonizing semantic annotations for computational models in biology ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ... Briefings in bioinformatics 20 (2), 540-550, 2019	49	2019
c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans P Gleeson, D Lung, R Grosu, R Hasani, SD Larson Philosophical Transactions of the Royal Society B: Biological Sciences 373 …, 2018	46	2018
Code generation in computational neuroscience: a review of tools and techniques I Blundell, R Brette, TA Cleland, TG Close, D Coca, AP Davison, ... Frontiers in Neuroinformatics 12, 68, 2018	38	2018
NineML: the network interchange for neuroscience modeling language I Raikov, R Cannon, R Clewley, H Cornelis, A Davison, E De Schutter, ... BMC Neuroscience 12 (Suppl 1), P330, 2011	38	2011
libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience M Vella, RC Cannon, S Crook, AP Davison, G Ganapathy, HPC Robinson, ... Frontiers in neuroinformatics 8, 2014	32	2014
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE) D Waltemath, FT Bergmann, C Chaouiya, T Czauderna, P Gleeson, ... Standards in Genomic Sciences 9 (3), 1285, 2014	30	2014

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