| RNAmmer: consistent and rapid annotation of ribosomal RNA genes K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery Nucleic acids research 35 (9), 3100-3108, 2007 | 3996 | 2007 |
| The genome sequence of Schizosaccharomyces pombe V Wood, R Gwilliam, MA Rajandream, M Lyne, R Lyne, A Stewart, ... nature 415 (6874), 871-880, 2002 | 1826 | 2002 |
| Multilocus sequence typing of total-genome-sequenced bacteria MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ... Journal of clinical microbiology 50 (4), 1355-1361, 2012 | 1177 | 2012 |
| The minimum information about a genome sequence (MIGS) specification D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ... Nature biotechnology 26 (5), 541-547, 2008 | 1170 | 2008 |
| Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 HJ Pel, JH de Winde, DB Archer, PS Dyer, G Hofmann, PJ Schaap, ... Nature biotechnology 25 (2), 221-231, 2007 | 1124 | 2007 |
| Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014 | 626 | 2014 |
| Comparison of 61 sequenced Escherichia coli genomes O Lukjancenko, TM Wassenaar, DW Ussery Microbial ecology 60 (4), 708-720, 2010 | 512 | 2010 |
| Insights from 20 years of bacterial genome sequencing M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ... Functional & integrative genomics 15 (2), 141-161, 2015 | 510 | 2015 |
| The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium C Kröger, SC Dillon, ADS Cameron, K Papenfort, SK Sivasankaran, ... Proceedings of the National Academy of Sciences 109 (20), E1277-E1286, 2012 | 371 | 2012 |
| A DNA structural atlas for Escherichia coli AG Pedersen, LJ Jensen, S Brunak, HH Stærfeldt, DW Ussery Journal of molecular biology 299 (4), 907-930, 2000 | 243 | 2000 |
| The chromatin‐associated protein H‐NS alters DNA topology in vitro. AE Tupper, TA Owen‐Hughes, DW Ussery, DS Santos, DJ Ferguson, ... The EMBO journal 13 (1), 258-268, 1994 | 243 | 1994 |
| On the total number of genes and their length distribution in complete microbial genomes M Skovgaard, LJ Jensen, S Brunak, D Ussery, A Krogh TRENDS in Genetics 17 (8), 425-428, 2001 | 235 | 2001 |
| Ten years of bacterial genome sequencing: comparative-genomics-based discoveries TT Binnewies, Y Motro, PF Hallin, O Lund, D Dunn, T La, DJ Hampson, ... Functional & integrative genomics 6 (3), 165-185, 2006 | 210 | 2006 |
| RNammer: consistent annotation of rRNA genes in genomic sequences K Lagesen, PF Hallin, E Rødland, HH Stærfeldt, T Rognes, DW Ussery Nucleic Acids Res 35 (9), 3100-3108, 2007 | 205 | 2007 |
| The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri WG Miller, CT Parker, M Rubenfield, GL Mendz, MMSM Wösten, ... PloS one 2 (12), e1358, 2007 | 201 | 2007 |
| The Salmonella enterica Pan-genome A Jacobsen, RS Hendriksen, FM Aaresturp, DW Ussery, C Friis Microbial ecology 62 (3), 487, 2011 | 185 | 2011 |
| Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes RS Kaas, C Friis, DW Ussery, FM Aarestrup BMC genomics 13 (1), 1-13, 2012 | 182 | 2012 |
| Genomic taxonomy of vibrios CC Thompson, ACP Vicente, RC Souza, ATR Vasconcelos, T Vesth, ... BMC Evolutionary Biology 9 (1), 1-16, 2009 | 163 | 2009 |
| The genomic standards consortium D Field, L Amaral-Zettler, G Cochrane, JR Cole, P Dawyndt, GM Garrity, ... PLoS Biol 9 (6), e1001088, 2011 | 152 | 2011 |
| Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus EF Boyd, ALV Cohen, LM Naughton, DW Ussery, TT Binnewies, OC Stine, ... BMC microbiology 8 (1), 1-14, 2008 | 139 | 2008 |
