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Dave Ussery
Dave Ussery
Professor, Department of BioMedical Informatics, UAMS
Verifisert e-postadresse på uams.edu - Startside
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RNAmmer: consistent and rapid annotation of ribosomal RNA genes
K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic acids research 35 (9), 3100-3108, 2007
55552007
Multilocus sequence typing of total-genome-sequenced bacteria
MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ...
Journal of clinical microbiology 50 (4), 1355-1361, 2012
21352012
The genome sequence of Schizosaccharomyces pombe
V Wood, R Gwilliam, MA Rajandream, M Lyne, R Lyne, A Stewart, ...
Nature 415 (6874), 871-880, 2002
21082002
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
HJ Pel, JH de Winde, DB Archer, PS Dyer, G Hofmann, PJ Schaap, ...
Nature biotechnology 25 (2), 221-231, 2007
13472007
The minimum information about a genome sequence (MIGS) specification
D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ...
Nature biotechnology 26 (5), 541-547, 2008
13432008
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ...
Nature biotechnology 32 (8), 822-828, 2014
10682014
Insights from 20 years of bacterial genome sequencing
M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ...
Functional & integrative genomics 15, 141-161, 2015
8632015
Comparison of 61 Sequenced Escherichia coli Genomes
O Lukjancenko, TM Wassenaar, DW Ussery
Microbial ecology 60, 708-720, 2010
6762010
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
C Kröger, SC Dillon, ADS Cameron, K Papenfort, SK Sivasankaran, ...
Proceedings of the National Academy of Sciences 109 (20), E1277-E1286, 2012
4632012
Benchmarking of methods for genomic taxonomy
MV Larsen, S Cosentino, O Lukjancenko, D Saputra, S Rasmussen, ...
Journal of clinical microbiology 52 (5), 1529-1539, 2014
3092014
The chromatin‐associated protein H‐NS alters DNA topology in vitro.
AE Tupper, TA Owen‐Hughes, DW Ussery, DS Santos, DJ Ferguson, ...
The EMBO journal 13 (1), 258-268, 1994
2771994
A DNA structural atlas for Escherichia coli
AG Pedersen, LJ Jensen, S Brunak, HH Stærfeldt, DW Ussery
Journal of molecular biology 299 (4), 907-930, 2000
2672000
Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
RS Kaas, C Friis, DW Ussery, FM Aarestrup
BMC genomics 13, 1-13, 2012
2632012
RNammer: consistent annotation of rRNA genes in genomic sequences
K Lagesen, PF Hallin, E Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic Acids Res 35 (9), 3100-3108, 2007
2592007
The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri
WG Miller, CT Parker, M Rubenfield, GL Mendz, MMSM Wösten, ...
PloS one 2 (12), e1358, 2007
2582007
On the total number of genes and their length distribution in complete microbial genomes
M Skovgaard, LJ Jensen, S Brunak, D Ussery, A Krogh
TRENDS in Genetics 17 (8), 425-428, 2001
2542001
Ten years of bacterial genome sequencing: comparative-genomics-based discoveries
TT Binnewies, Y Motro, PF Hallin, O Lund, D Dunn, T La, DJ Hampson, ...
Functional & integrative genomics 6, 165-185, 2006
2502006
Machine learning methods in drug discovery
L Patel, T Shukla, X Huang, DW Ussery, S Wang
Molecules 25 (22), 5277, 2020
2362020
The Salmonella enterica Pan-genome
A Jacobsen, RS Hendriksen, FM Aaresturp, DW Ussery, C Friis
Microbial ecology 62, 487-504, 2011
2272011
Genomic taxonomy of vibrios
CC Thompson, ACP Vicente, RC Souza, ATR Vasconcelos, T Vesth, ...
BMC Evolutionary Biology 9, 1-16, 2009
2022009
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Artikler 1–20