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Torbjørn Rognes
Torbjørn Rognes
Dept. of Informatics, University of Oslo & Dept. of Microbiology, Oslo University Hospital
Verified email at ifi.uio.no - Homepage
Title
Cited by
Cited by
Year
VSEARCH: a versatile open source tool for metagenomics
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
PeerJ 4, e2584, 2016
7923*2016
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic Acids Research 35 (9), 3100-3108, 2007
58862007
Swarm: robust and fast clustering method for amplicon-based studies
F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn
PeerJ 2, 593, 2014
854*2014
DNA repair in mammalian cells: Base excision repair: the long and short of it
AB Robertson, A Klungland, T Rognes, I Leiros
Cellular and molecular life sciences 66, 981-993, 2009
8302009
Swarm v2: highly-scalable and high-resolution amplicon clustering
F Mahé, T Rognes, C Quince, C De Vargas, M Dunthorn
PeerJ 3, e1420, 2015
536*2015
Opposite base‐dependent reactions of a human base excision repair enzyme on DNA containing 7, 8‐dihydro‐8‐oxoguanine and abasic sites
M Bjørås, L Luna, B Johnsen, E Hoff, T Haug, T Rognes, E Seeberg
The EMBO journal, 1997
4071997
Human DNA glycosylases of the bacterial Fpg/MutM superfamily: an alternative pathway for the repair of 8‐oxoguanine and other oxidation products in DNA
I Morland, V Rolseth, L Luna, T Rognes, M Bjørås, E Seeberg
Nucleic acids research 30 (22), 4926-4936, 2002
3322002
Six-fold speed-up of Smith–Waterman sequence database searches using parallel processing on common microprocessors
T Rognes, E Seeberg
Bioinformatics 16 (8), 699-706, 2000
3282000
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
T Rognes
BMC Bioinformatics 12 (1), 221, 2011
2722011
The Saccharomyces cerevisiae homologues of endonuclease III from Escherichia coli, Ntg1 and Ntg2, are both required for efficient repair of spontaneous and induced oxidative …
I Alseth, L Eide, M Pirovano, T Rognes, E Seeberg, M Bjørås
Molecular and cellular biology, 1999
1821999
Open-source sequence clustering methods improve the state of the art
E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ...
MSystems 1 (1), 10.1128/msystems. 00003-15, 2016
1602016
Genome dynamics in major bacterial pathogens
OH Ambur, T Davidsen, SA Frye, SV Balasingham, K Lagesen, T Rognes, ...
FEMS microbiology reviews 33 (3), 453-470, 2009
1362009
ALKBH1 is a histone H2A dioxygenase involved in neural differentiation
R Ougland, D Lando, I Jonson, JA Dahl, MN Moen, LM Nordstrand, ...
Stem cells 30 (12), 2672-2682, 2012
1242012
Biased distribution of DNA uptake sequences towards genome maintenance genes
T Davidsen, EA Rødland, K Lagesen, E Seeberg, T Rognes, T Tønjum
Nucleic acids research 32 (3), 1050-1058, 2004
1112004
ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches
T Rognes
Nucleic acids research 29 (7), 1647-1652, 2001
942001
Cell-cycle regulation, intracellular sorting and induced overexpression of the human NTH1 DNA glycosylase involved in removal of formamidopyrimidine residues from DNA
L Luna, M Bjørås, E Hoff, T Rognes, E Seeberg
Mutation Research/DNA Repair 460 (2), 95-104, 2000
912000
Determination of optimal local sequence alignment similarity score
T Rognes
US Patent 7,917,302, 2011
852011
Characterization of novel mutations in the catalytic domain of the PCSK9 gene
J Cameron, ØL Holla, JK Laerdahl, MA Kulseth, T Ranheim, T Rognes, ...
Journal of internal medicine 263 (4), 420-431, 2008
852008
Incision at hypoxanthine residues in DNA by a mammalian homologue of the Escherichia coli antimutator enzyme endonuclease V
A Moe, J Ringvoll, LM Nordstrand, L Eide, M Bjørås, E Seeberg, ...
Nucleic acids research 31 (14), 3893-3900, 2003
852003
Continuous and periodic expansion of CAG repeats in Huntington's disease R6/1 mice
L Møllersen, AD Rowe, E Larsen, T Rognes, A Klungland
PLoS genetics 6 (12), e1001242, 2010
772010
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Articles 1–20