Torbjørn Rognes

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Frédéric MahéCIRAD, UMR PHIM, F-34398, Montpellier, FranceVerifisert e-postadresse på cirad.fr
Christopher QuinceEarlham InstituteVerifisert e-postadresse på earlham.ac.uk
Karin LagesenNorwegian Veterinary Institute, and University of OsloVerifisert e-postadresse på vetinst.no
Magnar BjøråsProfessor in molecular medicineVerifisert e-postadresse på ntnu.no
Tomas FlouriUniversity College LondonVerifisert e-postadresse på ucl.ac.uk
Micah DunthornNatural History Museum, University of OsloVerifisert e-postadresse på nhm.uio.no
Dave UsseryProfessor, Department of BioMedical Informatics, UAMSVerifisert e-postadresse på uams.edu
Jon K LaerdahlOslo University HospitalVerifisert e-postadresse på medisin.uio.no
Geir Kjetil SandveProfessor, bioinformatics, University of OsloVerifisert e-postadresse på ifi.uio.no
Tone TønjumProfessor of Microbiology and consulting physician University of Oslo and Oslo University HospitalVerifisert e-postadresse på medisin.uio.no
Hilde NilsenUniversity of OsloVerifisert e-postadresse på medisin.uio.no
Bjørn DalhusUniversity of OsloVerifisert e-postadresse på medisin.uio.no
Sigve NakkenInstitute for Cancer Research, Oslo University Hospital, NorwayVerifisert e-postadresse på ifi.uio.no
James Alexander BoothResearcher at Oslo University HospitalVerifisert e-postadresse på ntnu.no
Eivind HovigProfessor.1. Centre for bioinformatics. Dept. of Informatics, Univ of Oslo. 2. Oslo Univ. Hosp.Verifisert e-postadresse på ifi.uio.no
Alexander NederbragtUniversity of Oslo, Dept. of Biosciences/Centre for Ecoloigcal and Evolutionary Synthesis andVerifisert e-postadresse på bio.uio.no
Evguenia KopylovaHost-microbiome data analysis | Managing Director, Clarity GenomicsVerifisert e-postadresse på clarity-genomics.com
Jose A Navas-MolinaUniversity of California, San DiegoVerifisert e-postadresse på eng.ucsd.edu
J Gregory CaporasoNorthern Arizona UniversityVerifisert e-postadresse på nau.edu
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerifisert e-postadresse på ucsd.edu

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Torbjørn Rognes

Dept. of Informatics, University of Oslo & Dept. of Microbiology, Oslo University Hospital

Verifisert e-postadresse på ifi.uio.no - Startside

Bioinformatics Microbiome Computer science Algorithms Computational biology


Tittel Sorter etter sitater Sorter etter år Sorter etter tittel	Sitert av Sitert av	År
VSEARCH: a versatile open source tool for metagenomics T Rognes, T Flouri, B Nichols, C Quince, F Mahé PeerJ 4, e2584, 2016	8718*	2016
RNAmmer: consistent and rapid annotation of ribosomal RNA genes K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery Nucleic Acids Research 35 (9), 3100-3108, 2007	6084	2007
Swarm: robust and fast clustering method for amplicon-based studies F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn PeerJ 2, 593, 2014	901*	2014
DNA repair in mammalian cells: Base excision repair: the long and short of it AB Robertson, A Klungland, T Rognes, I Leiros Cellular and molecular life sciences 66, 981-993, 2009	854	2009
Swarm v2: highly-scalable and high-resolution amplicon clustering F Mahé, T Rognes, C Quince, C De Vargas, M Dunthorn PeerJ 3, e1420, 2015	554*	2015
Opposite base‐dependent reactions of a human base excision repair enzyme on DNA containing 7, 8‐dihydro‐8‐oxoguanine and abasic sites M Bjørås, L Luna, B Johnsen, E Hoff, T Haug, T Rognes, E Seeberg The EMBO journal, 1997	409	1997
Six-fold speed-up of Smith–Waterman sequence database searches using parallel processing on common microprocessors T Rognes, E Seeberg Bioinformatics 16 (8), 699-706, 2000	339	2000
Human DNA glycosylases of the bacterial Fpg/MutM superfamily: an alternative pathway for the repair of 8‐oxoguanine and other oxidation products in DNA I Morland, V Rolseth, L Luna, T Rognes, M Bjørås, E Seeberg Nucleic acids research 30 (22), 4926-4936, 2002	332	2002
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation T Rognes BMC Bioinformatics 12 (1), 221, 2011	283	2011
The Saccharomyces cerevisiae homologues of endonuclease III from Escherichia coli, Ntg1 and Ntg2, are both required for efficient repair of spontaneous and induced oxidative … I Alseth, L Eide, M Pirovano, T Rognes, E Seeberg, M Bjørås Molecular and cellular biology, 1999	184	1999
Open-source sequence clustering methods improve the state of the art E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ... MSystems 1 (1), 10.1128/msystems. 00003-15, 2016	162	2016
Genome dynamics in major bacterial pathogens OH Ambur, T Davidsen, SA Frye, SV Balasingham, K Lagesen, T Rognes, ... FEMS microbiology reviews 33 (3), 453-470, 2009	135	2009
ALKBH1 is a histone H2A dioxygenase involved in neural differentiation R Ougland, D Lando, I Jonson, JA Dahl, MN Moen, LM Nordstrand, ... Stem cells 30 (12), 2672-2682, 2012	126	2012
Biased distribution of DNA uptake sequences towards genome maintenance genes T Davidsen, EA Rødland, K Lagesen, E Seeberg, T Rognes, T Tønjum Nucleic acids research 32 (3), 1050-1058, 2004	114	2004
ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches T Rognes Nucleic acids research 29 (7), 1647-1652, 2001	96	2001
Cell-cycle regulation, intracellular sorting and induced overexpression of the human NTH1 DNA glycosylase involved in removal of formamidopyrimidine residues from DNA L Luna, M Bjørås, E Hoff, T Rognes, E Seeberg Mutation Research/DNA Repair 460 (2), 95-104, 2000	93	2000
Characterization of novel mutations in the catalytic domain of the PCSK9 gene J Cameron, ØL Holla, JK Laerdahl, MA Kulseth, T Ranheim, T Rognes, ... Journal of internal medicine 263 (4), 420-431, 2008	87	2008
Incision at hypoxanthine residues in DNA by a mammalian homologue of the Escherichia coli antimutator enzyme endonuclease V A Moe, J Ringvoll, LM Nordstrand, L Eide, M Bjørås, E Seeberg, ... Nucleic acids research 31 (14), 3893-3900, 2003	86	2003
Determination of optimal local sequence alignment similarity score T Rognes US Patent 7,917,302, 2011	85	2011
Mice lacking Alkbh1 display sex-ratio distortion and unilateral eye defects LM Nordstrand, J Svärd, E Larsen, A Nilsen, R Ougland, K Furu, GF Lien, ... PLoS One 5 (11), e13827, 2010	81	2010

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